Fip1l1 (factor interacting with PAPOLA and CPSF1) - Rat Genome Database

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Gene: Fip1l1 (factor interacting with PAPOLA and CPSF1) Heterocephalus glaber
Analyze
Symbol: Fip1l1
Name: factor interacting with PAPOLA and CPSF1
RGD ID: 18906070
Description: INVOLVED IN mRNA processing (inferred); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH congestive heart failure (ortholog); Eosinophilia (ortholog); hypereosinophilic syndrome (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FIP1 like 1; pre-mRNA 3'-end-processing factor FIP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476116,071,097 - 16,145,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476116,067,962 - 16,145,116 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fip1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476116,071,097 - 16,145,052 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476116,067,962 - 16,145,116 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FIP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38453,377,641 - 53,460,862 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl453,377,569 - 53,464,382 (+)EnsemblGRCh38hg38GRCh38
GRCh37454,243,808 - 54,327,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36453,938,620 - 54,020,599 (+)NCBINCBI36Build 36hg18NCBI36
Build 34454,084,790 - 54,166,770NCBI
Celera451,741,311 - 51,823,579 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef450,188,974 - 50,271,212 (+)NCBIHuRef
CHM1_1454,279,549 - 54,361,766 (+)NCBICHM1_1
T2T-CHM13v2.0456,864,883 - 56,948,080 (+)NCBIT2T-CHM13v2.0
Fip1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39574,695,774 - 74,759,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl574,696,110 - 74,759,461 (+)EnsemblGRCm39 Ensembl
GRCm38574,535,438 - 74,598,790 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl574,535,449 - 74,598,800 (+)EnsemblGRCm38mm10GRCm38
MGSCv37574,931,507 - 74,993,149 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36574,817,214 - 74,878,821 (+)NCBIMGSCv36mm8
Celera571,800,525 - 71,862,059 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map539.51NCBI
Fip1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81433,969,341 - 34,030,871 (-)NCBIGRCr8
mRatBN7.21433,615,210 - 33,675,742 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1433,617,720 - 33,675,708 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1433,964,910 - 34,022,751 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01435,272,481 - 35,330,326 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01433,757,969 - 33,815,810 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01436,150,381 - 36,208,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1436,150,399 - 36,208,373 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01435,974,199 - 36,034,742 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41435,993,131 - 36,050,974 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11435,994,059 - 36,051,901 (-)NCBI
Celera1432,879,139 - 32,936,980 (-)NCBICelera
Cytogenetic Map14p11NCBI
Fip1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544717,265,269 - 17,334,197 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544717,265,269 - 17,334,197 (-)NCBIChiLan1.0ChiLan1.0
FIP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2376,350,462 - 76,432,842 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1476,551,653 - 76,637,812 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0470,495,627 - 70,579,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1477,050,856 - 77,132,995 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl477,050,858 - 77,133,003 (-)Ensemblpanpan1.1panPan2
FIP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11346,011,473 - 46,083,024 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1346,011,681 - 46,083,076 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1345,969,394 - 46,041,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01346,621,617 - 46,693,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1346,621,616 - 46,696,251 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11346,295,076 - 46,366,840 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01345,827,152 - 45,898,891 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01346,700,314 - 46,771,799 (+)NCBIUU_Cfam_GSD_1.0
Fip1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528530,101,404 - 30,171,613 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648216,126,536 - 16,193,962 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648216,126,608 - 16,194,729 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FIP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1840,157,263 - 40,235,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2842,284,295 - 42,351,888 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FIP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1715,072,962 - 15,147,216 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl715,069,470 - 15,147,178 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606615,944,492 - 16,026,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000026859   ⟹   ENSHGLP00000026622
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476116,071,097 - 16,145,052 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026860   ⟹   ENSHGLP00000026623
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476116,071,098 - 16,145,051 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026861   ⟹   ENSHGLP00000026624
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476116,071,099 - 16,145,046 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000026862   ⟹   ENSHGLP00000026625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476116,071,157 - 16,144,855 (-)Ensembl
RefSeq Acc Id: XM_004849715   ⟹   XP_004849772
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,114 (-)NCBI
RefSeq Acc Id: XM_004849716   ⟹   XP_004849773
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,113 (-)NCBI
RefSeq Acc Id: XM_004849717   ⟹   XP_004849774
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,114 (-)NCBI
RefSeq Acc Id: XM_004849718   ⟹   XP_004849775
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,116 (-)NCBI
RefSeq Acc Id: XM_004849719   ⟹   XP_004849776
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,115 (-)NCBI
RefSeq Acc Id: XM_004849720   ⟹   XP_004849777
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,114 (-)NCBI
RefSeq Acc Id: XM_013073967   ⟹   XP_012929421
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,114 (-)NCBI
RefSeq Acc Id: XM_013073968   ⟹   XP_012929422
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,116 (-)NCBI
RefSeq Acc Id: XM_021262342   ⟹   XP_021118001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,144,389 (-)NCBI
RefSeq Acc Id: XM_021262343   ⟹   XP_021118002
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476116,067,962 - 16,145,115 (-)NCBI
RefSeq Acc Id: XP_004849775   ⟸   XM_004849718
- Peptide Label: isoform X8
- UniProtKB: A0AAX6PEG1 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929422   ⟸   XM_013073968
- Peptide Label: isoform X6
- UniProtKB: A0AAX6QWC5 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849776   ⟸   XM_004849719
- Peptide Label: isoform X9
- UniProtKB: A0AAX6PES4 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118002   ⟸   XM_021262343
- Peptide Label: isoform X7
- UniProtKB: A0AAX6T6P1 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849777   ⟸   XM_004849720
- Peptide Label: isoform X10
- UniProtKB: A0AAX6PET8 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849774   ⟸   XM_004849717
- Peptide Label: isoform X5
- UniProtKB: A0AAX6PDY3 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849772   ⟸   XM_004849715
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JEE5 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929421   ⟸   XM_013073967
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R153 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004849773   ⟸   XM_004849716
- Peptide Label: isoform X4
- UniProtKB: A0AAX6PDZ9 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118001   ⟸   XM_021262342
- Peptide Label: isoform X3
- UniProtKB: A0AAX6T9W8 (UniProtKB/TrEMBL),   G5C9V2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000026624   ⟸   ENSHGLT00000026861
Ensembl Acc Id: ENSHGLP00000026625   ⟸   ENSHGLT00000026862
Ensembl Acc Id: ENSHGLP00000026622   ⟸   ENSHGLT00000026859
Ensembl Acc Id: ENSHGLP00000026623   ⟸   ENSHGLT00000026860


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018937 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026859 ENTREZGENE
  ENSHGLT00000026860 ENTREZGENE
  ENSHGLT00000026861 ENTREZGENE
  ENSHGLT00000026862 ENTREZGENE
InterPro Fip1_dom UniProtKB/TrEMBL
  Pre-mRNA_3'-end_processing_reg UniProtKB/TrEMBL
KEGG Report hgl:101700547 UniProtKB/TrEMBL
NCBI Gene Fip1l1 ENTREZGENE
PANTHER FIP1-LIKE 1 PROTEIN UniProtKB/TrEMBL
  PRE-MRNA 3'-END-PROCESSING FACTOR FIP1 UniProtKB/TrEMBL
Pfam Fip1 UniProtKB/TrEMBL
UniProt A0A0P6JEE5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PDY3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PDZ9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PEG1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PES4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PET8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QWC5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R153 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T6P1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T9W8 ENTREZGENE, UniProtKB/TrEMBL
  G5C9V2 ENTREZGENE, UniProtKB/TrEMBL