Spmap1 (sperm microtubule associated protein 1) - Rat Genome Database

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Gene: Spmap1 (sperm microtubule associated protein 1) Heterocephalus glaber
Analyze
Symbol: Spmap1 (Ensembl: C17orf98)
Name: sperm microtubule associated protein 1 (Ensembl:chromosome unknown C17orf98 homolog)
RGD ID: 18906060
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C17orf98 homolog; CUNH17orf98; uncharacterized protein C17orf98 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,882,511 - 3,885,312 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,882,785 - 3,885,320 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Spmap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,882,511 - 3,885,312 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,882,785 - 3,885,320 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPMAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,835,086 - 38,841,438 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,835,086 - 38,841,438 (-)EnsemblGRCh38hg38GRCh38
GRCh371736,991,339 - 36,997,691 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,244,867 - 34,251,168 (-)NCBINCBI36Build 36hg18NCBI36
Celera1733,652,304 - 33,658,595 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,786,526 - 32,792,792 (-)NCBIHuRef
CHM1_11737,226,653 - 37,232,941 (-)NCBICHM1_1
T2T-CHM13v2.01739,698,166 - 39,704,496 (-)NCBIT2T-CHM13v2.0
Spmap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,662,307 - 97,666,744 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,662,307 - 97,666,744 (-)EnsemblGRCm39 Ensembl
GRCm381197,771,481 - 97,775,918 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,771,481 - 97,775,918 (-)EnsemblGRCm38mm10GRCm38
MGSCv371197,632,795 - 97,637,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,587,572 - 97,592,008 (-)NCBIMGSCv36mm8
Celera11107,421,004 - 107,425,441 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.1NCBI
Spmap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,260,797 - 83,265,029 (-)NCBIGRCr8
mRatBN7.21082,763,969 - 82,768,587 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,764,438 - 82,768,039 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01085,713,161 - 85,717,801 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,713,640 - 85,717,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,503,679 - 85,507,298 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,519,984 - 86,523,409 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,519,387 - 81,524,027 (-)NCBICelera
Cytogenetic Map10q31NCBI
Spmap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,888,304 - 13,891,524 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,888,362 - 13,891,524 (-)NCBIChiLan1.0ChiLan1.0
SPMAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,106,947 - 26,114,234 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11727,990,519 - 27,997,809 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,429,897 - 18,436,366 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,703,772 - 18,711,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,703,772 - 18,711,133 (+)Ensemblpanpan1.1panPan2
SPMAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,405,851 - 23,409,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,406,199 - 23,409,427 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha922,877,953 - 22,881,255 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0924,200,954 - 24,204,245 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl924,201,034 - 24,204,252 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1922,973,305 - 22,976,604 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0923,233,959 - 23,237,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0923,359,854 - 23,363,162 (+)NCBIUU_Cfam_GSD_1.0
Spmap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,836,944 - 22,839,701 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,235,540 - 14,238,119 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,235,540 - 14,238,493 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPMAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,286,647 - 23,290,151 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,285,887 - 23,290,194 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPMAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,351,569 - 67,363,380 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1667,351,683 - 67,363,277 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607738,339,015 - 38,353,698 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000020086   ⟹   ENSHGLP00000019887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247953,882,511 - 3,885,312 (+)Ensembl
RefSeq Acc Id: XM_004859531   ⟹   XP_004859588
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247953,882,785 - 3,885,320 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004859588 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB09677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019887
RefSeq Acc Id: XP_004859588   ⟸   XM_004859531
- UniProtKB: G5BK66 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019887   ⟸   ENSHGLT00000020086


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014241 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020086 ENTREZGENE
InterPro DUF4542 UniProtKB/TrEMBL
NCBI Gene CUNH17orf98 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC691189 UniProtKB/TrEMBL
  HYPOTHETICAL PROTEIN LOC691189 UniProtKB/TrEMBL
Pfam DUF4542 UniProtKB/TrEMBL
UniProt G5BK66 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-02 Spmap1  sperm microtubule associated protein 1  CUNH17orf98  chromosome unknown C17orf98 homolog  Symbol and/or name change 5135510 APPROVED