Pdia2 (protein disulfide isomerase family A member 2) - Rat Genome Database

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Gene: Pdia2 (protein disulfide isomerase family A member 2) Heterocephalus glaber
Analyze
Symbol: Pdia2
Name: protein disulfide isomerase family A member 2
RGD ID: 18905983
Description: ENCODES a protein that exhibits isomerase activity (inferred); protein disulfide isomerase activity (inferred); protein-disulfide reductase activity (inferred); INVOLVED IN platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH bicuspid aortic valve disease (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum lumen (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein disulfide-isomerase A2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,135,536 - 1,138,819 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,135,498 - 1,138,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pdia2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,135,536 - 1,138,819 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,135,498 - 1,138,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816283,164 - 287,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16283,164 - 287,215 (+)EnsemblGRCh38hg38GRCh38
GRCh3716333,164 - 337,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616273,119 - 277,210 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416273,208 - 277,210NCBI
Celera16533,017 - 537,108 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16251,360 - 255,512 (+)NCBIHuRef
CHM1_116333,055 - 337,171 (+)NCBICHM1_1
T2T-CHM13v2.016278,036 - 282,088 (+)NCBIT2T-CHM13v2.0
Pdia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,414,973 - 26,418,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,414,973 - 26,418,061 (-)EnsemblGRCm39 Ensembl
GRCm381726,195,999 - 26,199,134 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,195,999 - 26,199,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,332,944 - 26,336,032 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,923,599 - 25,926,687 (-)NCBIMGSCv36mm8
Celera1726,729,757 - 26,732,844 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.07NCBI
Pdia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,720,301 - 15,723,386 (-)NCBIGRCr8
mRatBN7.21015,215,824 - 15,218,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,215,824 - 15,220,931 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,955,596 - 19,958,670 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,444,475 - 19,447,549 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,943,755 - 14,946,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.01015,376,461 - 15,379,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,462,935 - 15,466,009 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,463,985 - 15,467,059 (-)NCBI
Celera1014,883,630 - 14,886,704 (-)NCBICelera
Cytogenetic Map10q12NCBI
Pdia2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,898,635 - 16,901,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,898,563 - 16,901,867 (-)NCBIChiLan1.0ChiLan1.0
PDIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218501,336 - 506,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,294,232 - 4,298,939 (+)NCBINHGRI_mPanPan1
PanPan1.116273,692 - 278,014 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16273,764 - 277,914 (+)Ensemblpanpan1.1panPan2
PDIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,218,566 - 40,221,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,218,550 - 40,231,402 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,482,205 - 41,485,425 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,560,945 - 40,564,168 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,560,945 - 40,564,149 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,249,209 - 40,252,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,210,283 - 40,213,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,688,729 - 40,691,944 (-)NCBIUU_Cfam_GSD_1.0
Pdia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,536,174 - 112,539,335 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501634,118 - 637,000 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501634,034 - 637,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,394,058 - 41,397,687 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,394,267 - 41,397,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,030,474 - 41,033,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDIA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15229,523 - 233,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5229,607 - 233,200 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,943,512 - 30,947,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000004977   ⟹   ENSHGLP00000004913
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249131,135,536 - 1,138,819 (+)Ensembl
RefSeq Acc Id: XM_004873705   ⟹   XP_004873762
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249131,135,498 - 1,138,900 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004873762 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14136 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000004913
  ENSHGLP00100019637
Reference Protein Sequences
RefSeq Acc Id: XP_004873762   ⟸   XM_004873705
- UniProtKB: G5BXX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000004913   ⟸   ENSHGLT00000004977


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000003605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100014478 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000004977 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100019844 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Prot_disulphide_isomerase UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
NCBI Gene Pdia2 ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
  PROTEIN DISULFIDE-ISOMERASE A2 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PRINTS THIOREDOXIN UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt G5BXX5 ENTREZGENE, UniProtKB/TrEMBL