Gpm6a (glycoprotein M6A) - Rat Genome Database

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Gene: Gpm6a (glycoprotein M6A) Heterocephalus glaber
Analyze
Symbol: Gpm6a
Name: glycoprotein M6A
RGD ID: 18905878
Description: ENCODES a protein that exhibits calcium channel activity (ortholog); INVOLVED IN positive regulation of filopodium assembly (ortholog); regulation of synapse organization (ortholog); response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); neuron projection (ortholog); parallel fiber to Purkinje cell synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neuronal membrane glycoprotein M6-a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247696,762,743 - 6,904,757 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247696,763,158 - 7,082,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gpm6a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247696,762,743 - 6,904,757 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247696,763,158 - 7,082,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPM6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384175,632,937 - 176,002,691 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4175,632,934 - 176,002,664 (-)EnsemblGRCh38hg38GRCh38
GRCh374176,554,088 - 176,923,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364176,791,082 - 177,160,642 (-)NCBINCBI36Build 36hg18NCBI36
Build 344176,929,237 - 177,298,797NCBI
Celera4173,882,262 - 174,251,819 (-)NCBICelera
Cytogenetic Map4q34.2NCBI
HuRef4172,304,394 - 172,674,410 (-)NCBIHuRef
CHM1_14176,530,612 - 176,900,675 (-)NCBICHM1_1
T2T-CHM13v2.04178,971,366 - 179,341,143 (-)NCBIT2T-CHM13v2.0
Gpm6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39855,232,469 - 55,513,913 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl855,407,878 - 55,513,906 (+)EnsemblGRCm39 Ensembl
GRCm38854,779,434 - 55,060,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl854,954,843 - 55,060,871 (+)EnsemblGRCm38mm10GRCm38
MGSCv37856,040,081 - 56,146,231 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36856,453,541 - 56,559,569 (+)NCBIMGSCv36mm8
Celera857,650,307 - 57,756,272 (+)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.33NCBI
Gpm6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81643,374,385 - 43,706,461 (-)NCBIGRCr8
mRatBN7.21636,641,282 - 36,973,377 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1636,641,284 - 36,973,475 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1642,008,018 - 42,338,043 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01645,368,826 - 45,698,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01640,750,344 - 41,066,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01639,367,697 - 39,719,292 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1639,367,692 - 39,719,187 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01639,144,853 - 39,493,517 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41639,670,748 - 39,783,384 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11639,670,823 - 39,783,459 (-)NCBI
Celera1634,795,943 - 34,908,788 (-)NCBICelera
Cytogenetic Map16p11NCBI
Gpm6a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540331,861,945 - 31,997,382 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540331,704,540 - 31,997,382 (+)NCBIChiLan1.0ChiLan1.0
GPM6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23173,359,853 - 173,727,990 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14173,740,237 - 174,109,774 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04167,826,285 - 168,194,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14180,059,938 - 180,428,838 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4180,059,938 - 180,428,459 (-)Ensemblpanpan1.1panPan2
GPM6A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11653,697,830 - 53,846,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1653,698,043 - 53,845,259 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1649,017,267 - 49,350,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01655,829,048 - 56,161,090 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1655,829,183 - 56,163,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11653,724,013 - 54,054,937 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01654,320,566 - 54,651,964 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01654,556,465 - 54,887,736 (+)NCBIUU_Cfam_GSD_1.0
Gpm6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494325,924,766 - 26,232,887 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365166,338,819 - 6,481,425 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365166,339,058 - 6,647,412 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPM6A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1538,259,244 - 38,305,603 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11538,258,496 - 38,555,129 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21543,980,735 - 44,241,919 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPM6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17121,715,329 - 122,082,175 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7121,714,770 - 121,894,739 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037101,794,371 - 102,161,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004852951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004852952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01048700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01048718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01007278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000009717   ⟹   ENSHGLP00000009610
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247696,762,743 - 6,904,757 (-)Ensembl
RefSeq Acc Id: XM_004852951   ⟹   XP_004853008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247696,763,158 - 6,904,358 (-)NCBI
RefSeq Acc Id: XM_004852952   ⟹   XP_004853009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247696,763,158 - 7,082,764 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004853008 (Get FASTA)   NCBI Sequence Viewer  
  XP_004853009 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009610
  ENSHGLP00000045810
  ENSHGLP00100059807
GenBank Protein JAN96354 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004853009   ⟸   XM_004852952
- Peptide Label: isoform X2
- UniProtKB: G5BY03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004853008   ⟸   XM_004852951
- Peptide Label: isoform X1
- UniProtKB: A0A0P6IZA6 (UniProtKB/TrEMBL),   G5BY03 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009610   ⟸   ENSHGLT00000009717


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006894 Ensembl, ENTREZGENE
  ENSHGLG00000044374 UniProtKB/TrEMBL
  ENSHGLG00100036578 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000009717 ENTREZGENE
  ENSHGLT00000091537 UniProtKB/TrEMBL
  ENSHGLT00100061888 UniProtKB/TrEMBL
InterPro Myelin_PLP UniProtKB/TrEMBL
  Myelin_PLP_CS UniProtKB/TrEMBL
KEGG Report hgl:101716059 UniProtKB/TrEMBL
NCBI Gene Gpm6a ENTREZGENE
PANTHER NEURONAL MEMBRANE GLYCOPROTEIN M6-A UniProtKB/TrEMBL
  PTHR11683 UniProtKB/TrEMBL
Pfam Myelin_PLP UniProtKB/TrEMBL
PRINTS MYELINPLP UniProtKB/TrEMBL
PROSITE MYELIN_PLP_1 UniProtKB/TrEMBL
  MYELIN_PLP_2 UniProtKB/TrEMBL
SMART PLP UniProtKB/TrEMBL
UniProt A0A0P6IZA6 ENTREZGENE, UniProtKB/TrEMBL
  G5BY03 ENTREZGENE, UniProtKB/TrEMBL