Svip (small VCP interacting protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Svip (small VCP interacting protein) Heterocephalus glaber
Analyze
Symbol: Svip
Name: small VCP interacting protein
RGD ID: 18905710
Description: ENCODES a protein that exhibits ATPase binding (inferred); obsolete protein self-association (inferred); INVOLVED IN negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small VCP/p97-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476613,744,230 - 13,751,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476613,724,052 - 13,751,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Svip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476613,744,230 - 13,751,725 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476613,724,052 - 13,751,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SVIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,818,927 - 22,829,801 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,813,799 - 22,830,299 (-)EnsemblGRCh38hg38GRCh38
GRCh371122,840,473 - 22,851,347 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,800,174 - 22,807,958 (-)NCBINCBI36Build 36hg18NCBI36
Celera1122,977,457 - 22,985,238 (-)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,527,002 - 22,534,781 (-)NCBIHuRef
CHM1_11122,842,910 - 22,850,689 (-)NCBICHM1_1
T2T-CHM13v2.01122,939,594 - 22,950,463 (-)NCBIT2T-CHM13v2.0
Svip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,646,909 - 51,655,766 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl751,646,919 - 51,655,766 (-)EnsemblGRCm39 Ensembl
GRCm38751,997,161 - 52,006,018 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,997,171 - 52,006,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv37759,252,531 - 59,261,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera749,368,103 - 49,376,978 (-)NCBICelera
Cytogenetic Map7B4NCBI
cM Map732.91NCBI
Svip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,723,051 - 110,728,741 (-)NCBIGRCr8
mRatBN7.21101,587,128 - 101,592,818 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,587,128 - 101,593,116 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1106,995,963 - 107,001,610 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,467,855 - 115,473,502 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,771,199 - 108,776,889 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01107,368,117 - 107,373,807 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,368,117 - 107,373,807 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,409,749 - 108,415,439 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,803,004 - 101,808,688 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera195,753,801 - 95,759,491 (-)NCBICelera
Cytogenetic Map1q22NCBI
Svip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554763,231,789 - 3,236,602 (-)NCBIChiLan1.0ChiLan1.0
SVIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2925,105,704 - 25,114,912 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,069,811 - 25,079,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,828,321 - 22,837,536 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,726,818 - 22,744,558 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,735,361 - 22,744,558 (-)Ensemblpanpan1.1panPan2
SVIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,408,467 - 44,418,160 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,408,474 - 44,415,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2143,883,618 - 43,892,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02145,527,466 - 45,536,601 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2145,527,473 - 45,536,734 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12144,525,444 - 44,534,597 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02144,697,938 - 44,707,116 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02145,091,481 - 45,100,671 (-)NCBIUU_Cfam_GSD_1.0
Svip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,467,407 - 40,473,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366543,453,043 - 3,459,219 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366543,452,781 - 3,459,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SVIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl236,703,790 - 36,714,934 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1236,703,757 - 36,714,018 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2239,934,313 - 39,958,613 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SVIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,185,115 - 42,193,121 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,185,121 - 42,195,006 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038139,489,520 - 139,499,156 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009365   ⟹   ENSHGLP00000009265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476613,744,230 - 13,751,725 (-)Ensembl
RefSeq Acc Id: XM_004851569   ⟹   XP_004851626
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476613,744,230 - 13,751,744 (-)NCBI
RefSeq Acc Id: XM_021263935   ⟹   XP_021119594
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476613,724,052 - 13,751,773 (-)NCBI
RefSeq Acc Id: XM_021263936   ⟹   XP_021119595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476613,739,519 - 13,751,774 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004851626 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119594 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119595 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009265
  ENSHGLP00000045416
GenBank Protein JAO02588 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021119594   ⟸   XM_021263935
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021119595   ⟸   XM_021263936
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004851626   ⟸   XM_004851569
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JLG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009265   ⟸   ENSHGLT00000009365


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006647 Ensembl, ENTREZGENE
  ENSHGLG00000045445 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000009365 ENTREZGENE
  ENSHGLT00000043341 UniProtKB/TrEMBL
InterPro SVIP UniProtKB/TrEMBL
KEGG Report hgl:101699221 UniProtKB/TrEMBL
NCBI Gene Svip ENTREZGENE
PANTHER PTHR35269 UniProtKB/TrEMBL
  SMALL VCP/P97-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam SVIP UniProtKB/TrEMBL
UniProt A0A0P6JLG9 ENTREZGENE, UniProtKB/TrEMBL