LOC101703804 (mitochondrial chaperone BCS1) - Rat Genome Database

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Gene: LOC101703804 (mitochondrial chaperone BCS1) Heterocephalus glaber
Analyze
Symbol: LOC101703804 (Ensembl: BCS1L)
Name: mitochondrial chaperone BCS1
RGD ID: 18905697
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN mitochondrial cytochrome c oxidase assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); Bjornstad syndrome (ortholog); brain disease (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BCS1L
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,392,959 - 6,396,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,392,959 - 6,397,419 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101703804
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248236,392,959 - 6,396,854 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248236,392,959 - 6,397,419 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
BCS1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382218,658,743 - 218,663,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2218,658,764 - 218,663,443 (+)EnsemblGRCh38hg38GRCh38
GRCh372219,524,406 - 219,528,166 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,232,623 - 219,236,410 (+)NCBINCBI36Build 36hg18NCBI36
Build 342219,349,962 - 219,353,670NCBI
Celera2213,292,137 - 213,295,924 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,377,868 - 211,381,655 (+)NCBIHuRef
CHM1_12219,531,354 - 219,535,141 (+)NCBICHM1_1
T2T-CHM13v2.02219,145,300 - 219,150,000 (+)NCBIT2T-CHM13v2.0
Bcs1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,627,448 - 74,631,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl174,627,448 - 74,631,602 (+)EnsemblGRCm39 Ensembl
GRCm38174,588,289 - 74,592,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,588,289 - 74,592,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,634,935 - 74,639,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36174,521,568 - 74,525,650 (+)NCBIMGSCv36mm8
Celera175,146,048 - 75,150,130 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.54NCBI
Bcs1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8983,614,045 - 83,618,052 (+)NCBIGRCr8
mRatBN7.2976,164,925 - 76,168,940 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,164,932 - 76,168,938 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx984,610,060 - 84,614,037 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0989,739,009 - 89,742,986 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,125,191 - 88,129,168 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0981,868,158 - 81,872,201 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl981,868,265 - 81,872,197 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0981,630,618 - 81,634,583 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,939,024 - 73,943,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,086,005 - 74,090,036 (+)NCBI
Celera973,737,552 - 73,741,673 (+)NCBICelera
Cytogenetic Map9q33NCBI
LOC102007967
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,762,237 - 14,766,383 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,762,237 - 14,766,693 (-)NCBIChiLan1.0ChiLan1.0
LOC100988698
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,290,239 - 121,294,270 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,305,414 - 121,309,236 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B105,917,605 - 105,921,427 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B224,512,221 - 224,516,856 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,513,223 - 224,516,856 (+)Ensemblpanpan1.1panPan2
BCS1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,261,704 - 25,266,517 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,264,012 - 25,266,516 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,082,636 - 26,086,428 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,278,729 - 25,282,521 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,278,798 - 25,282,519 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,183,514 - 25,187,305 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,117,783 - 25,121,575 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,138,397 - 25,142,189 (+)NCBIUU_Cfam_GSD_1.0
LOC101961358
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,761,114 - 174,772,235 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,104,549 - 1,108,708 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,104,493 - 1,108,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCS1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,707,814 - 120,711,793 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,707,770 - 120,711,794 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BCS1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,563,912 - 104,567,706 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10104,565,184 - 104,568,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,836,161 - 94,840,005 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000012304   ⟹   ENSHGLP00000012170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248236,392,959 - 6,396,854 (-)Ensembl
RefSeq Acc Id: XM_004864580   ⟹   XP_004864637
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248236,392,959 - 6,396,986 (-)NCBI
RefSeq Acc Id: XM_004864582   ⟹   XP_004864639
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248236,392,959 - 6,397,419 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004864637 (Get FASTA)   NCBI Sequence Viewer  
  XP_004864639 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB02444 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012170
  ENSHGLP00100034805
GenBank Protein JAN98030 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004864639   ⟸   XM_004864582
- UniProtKB: G5AZI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004864637   ⟸   XM_004864580
- UniProtKB: G5AZI3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012170   ⟸   ENSHGLT00000012304


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008703 Ensembl, ENTREZGENE
  ENSHGLG00100038363 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000012304 ENTREZGENE
  ENSHGLT00100057620 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/TrEMBL
  BCS1_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report hgl:101703804 UniProtKB/TrEMBL
NCBI Gene LOC101703804 ENTREZGENE
PANTHER BCS1 AAA-TYPE ATPASE UniProtKB/TrEMBL
  MITOCHONDRIAL CHAPERONE BCS1 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  BCS1_N UniProtKB/TrEMBL
PROSITE AAA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  BCS1_N UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt G5AZI3 ENTREZGENE, UniProtKB/TrEMBL