Pdcl3 (phosducin like 3) - Rat Genome Database

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Gene: Pdcl3 (phosducin like 3) Heterocephalus glaber
Analyze
Symbol: Pdcl3
Name: phosducin like 3
RGD ID: 18905603
Description: ENCODES a protein that exhibits protein folding chaperone (inferred); vascular endothelial growth factor receptor 2 binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to heat (ortholog); chaperone-mediated protein folding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); perinucleolar compartment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Phosducin-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,410,476 - 5,422,533 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,410,501 - 5,419,625 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Pdcl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,410,476 - 5,422,533 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,410,501 - 5,419,625 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PDCL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382100,562,993 - 100,576,739 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2100,562,993 - 100,576,739 (+)EnsemblGRCh38hg38GRCh38
GRCh372101,179,455 - 101,193,201 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,545,859 - 100,559,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 342100,637,944 - 100,651,719NCBI
Celera295,384,039 - 95,397,821 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef294,943,898 - 94,957,677 (+)NCBIHuRef
CHM1_12101,183,727 - 101,197,486 (+)NCBICHM1_1
T2T-CHM13v2.02101,021,740 - 101,035,465 (+)NCBIT2T-CHM13v2.0
Pdcl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39139,026,895 - 39,036,317 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl139,024,689 - 39,036,319 (+)EnsemblGRCm39 Ensembl
GRCm38138,987,814 - 38,997,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl138,985,608 - 38,997,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv37139,044,659 - 39,054,081 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36138,932,360 - 38,941,782 (+)NCBIMGSCv36mm8
Celera138,777,037 - 38,786,281 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map117.36NCBI
Pdcl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8948,730,083 - 48,738,554 (+)NCBIGRCr8
mRatBN7.2941,234,322 - 41,243,769 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,234,234 - 41,243,735 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx949,728,486 - 49,736,952 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0954,851,230 - 54,859,696 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0953,135,081 - 53,143,552 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0945,672,257 - 45,680,728 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl945,672,157 - 45,680,799 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,362,541 - 45,371,012 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4938,004,222 - 38,012,693 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1938,005,635 - 38,014,107 (+)NCBI
Celera938,984,793 - 38,993,264 (+)NCBICelera
Cytogenetic Map9q22NCBI
Pdcl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554706,553,450 - 6,563,814 (+)NCBIChiLan1.0ChiLan1.0
PDCL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,650,776 - 27,663,784 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,653,533 - 27,666,151 (-)NCBINHGRI_mPanPan1
PanPan1.12A101,538,872 - 101,551,669 (+)NCBIpanpan1.1PanPan1.1panPan2
PDCL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11042,214,127 - 42,223,986 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1042,215,120 - 42,223,906 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1042,137,411 - 42,147,413 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01043,080,268 - 43,090,236 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1043,079,573 - 43,090,129 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,791,342 - 42,801,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01043,075,653 - 43,085,591 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01043,266,979 - 43,276,929 (-)NCBIUU_Cfam_GSD_1.0
Pdcl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,141,438 - 86,150,373 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936661419,113 - 428,032 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDCL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,674,509 - 53,692,928 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,681,798 - 53,693,034 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2356,244,971 - 56,256,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDCL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,275,182 - 4,289,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041171,892,827 - 171,907,083 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022478   ⟹   ENSHGLP00000022267
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247495,410,476 - 5,422,533 (+)Ensembl
RefSeq Acc Id: XM_004844440   ⟹   XP_004844497
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247495,410,501 - 5,419,625 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844497 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05153 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022267
  ENSHGLP00000046754
  ENSHGLP00100050178
GenBank Protein JAO02383 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004844497   ⟸   XM_004844440
- UniProtKB: G5B792 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000022267   ⟸   ENSHGLT00000022478


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015874 Ensembl, ENTREZGENE
  ENSHGLG00000038612 UniProtKB/TrEMBL
  ENSHGLG00100033038 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022478 ENTREZGENE
  ENSHGLT00000073165 UniProtKB/TrEMBL
  ENSHGLT00100059363 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Phosducin_thioredoxin-like_dom UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101702504 UniProtKB/TrEMBL
NCBI Gene Pdcl3 ENTREZGENE
PANTHER PHOSDUCIN-LIKE PROTEIN 3 UniProtKB/TrEMBL
  VIRAL IAP-ASSOCIATED FACTOR HOMOLOG UniProtKB/TrEMBL
Pfam Phosducin UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt G5B792 ENTREZGENE, UniProtKB/TrEMBL