LOC106007632 (histone H3) - Rat Genome Database

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Gene: LOC106007632 (histone H3) Heterocephalus glaber
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Symbol: LOC106007632 (Ensembl: HIST2H3C)
Name: histone H3
RGD ID: 18905357
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN chromosome (inferred); nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624756741,988 - 742,398 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624756741,877 - 745,034 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021260498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01036159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000028404   ⟹   ENSHGLP00000028049
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624756741,988 - 742,398 (+)Ensembl
RefSeq Acc Id: XM_021260498   ⟹   XP_021116157
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624756741,877 - 745,034 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021116157 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028049
RefSeq Acc Id: XP_021116157   ⟸   XM_021260498
- UniProtKB: G5BQE3 (UniProtKB/TrEMBL),   G5BP92 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028049   ⟸   ENSHGLT00000028404


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020194 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028404 ENTREZGENE
Gene3D-CATH Histone, subunit A UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H3/CENP-A UniProtKB/TrEMBL
NCBI Gene LOC106007632 ENTREZGENE
PANTHER HISTONE H3 UniProtKB/TrEMBL
  HISTONE H3.3 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH3 UniProtKB/TrEMBL
PROSITE HISTONE_H3_1 UniProtKB/TrEMBL
  HISTONE_H3_2 UniProtKB/TrEMBL
SMART SM00428 UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt G5BP92 ENTREZGENE, UniProtKB/TrEMBL
  G5BQE3 ENTREZGENE