Commd1 (copper metabolism domain containing 1) - Rat Genome Database

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Gene: Commd1 (copper metabolism domain containing 1) Heterocephalus glaber
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Symbol: Commd1
Name: copper metabolism domain containing 1
RGD ID: 18905115
Description: ENCODES a protein that exhibits copper ion binding (ortholog); identical protein binding (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); Golgi to plasma membrane transport (ortholog); low-density lipoprotein particle clearance (ortholog); ASSOCIATED WITH allergic disease (ortholog); Chronic Hepatitis (ortholog); Copper-Overload Cirrhosis (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: COMM domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,302,730 - 11,407,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Commd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476211,302,730 - 11,407,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
COMMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38261,888,391 - 62,136,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl261,888,724 - 62,147,247 (+)EnsemblGRCh38hg38GRCh38
GRCh37262,115,526 - 62,363,193 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36261,986,307 - 62,216,709 (+)NCBINCBI36Build 36hg18NCBI36
Build 34262,044,453 - 62,274,855NCBI
Celera261,977,700 - 62,207,946 (+)NCBICelera
Cytogenetic Map2p15NCBI
HuRef261,871,871 - 62,101,672 (+)NCBIHuRef
CHM1_1262,062,726 - 62,293,462 (+)NCBICHM1_1
T2T-CHM13v2.0261,894,549 - 62,142,285 (+)NCBIT2T-CHM13v2.0
Commd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391122,849,728 - 22,934,539 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1122,846,136 - 22,932,382 (-)EnsemblGRCm39 Ensembl
GRCm381122,899,728 - 22,984,539 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1122,896,136 - 22,982,382 (-)EnsemblGRCm38mm10GRCm38
MGSCv371122,799,728 - 22,882,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361122,799,728 - 22,882,284 (-)NCBIMGSCv36mm8
Celera1125,035,441 - 25,117,915 (-)NCBICelera
Cytogenetic Map11A3.2NCBI
cM Map1114.22NCBI
Commd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814101,081,667 - 101,185,738 (-)NCBIGRCr8
GRCr8 Ensembl14101,081,667 - 101,185,639 (-)EnsemblGRCr8 Ensembl
mRatBN7.21496,880,463 - 96,984,494 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1496,880,463 - 96,984,501 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14101,219,806 - 101,317,674 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014102,462,099 - 102,559,973 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01498,933,706 - 99,031,576 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014107,664,321 - 107,759,974 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14107,664,255 - 107,760,191 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014107,724,470 - 107,726,728 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.014107,804,733 - 107,835,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,571,472 - 103,667,692 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1495,868,544 - 95,965,715 (-)NCBICelera
Cytogenetic Map14q22NCBI
Commd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542421,927,079 - 22,050,371 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542421,962,837 - 22,067,745 (-)NCBIChiLan1.0ChiLan1.0
COMMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21264,248,377 - 64,495,641 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A64,252,327 - 64,499,591 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A61,970,830 - 62,216,677 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A63,121,490 - 63,349,256 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A63,121,521 - 63,349,131 (+)Ensemblpanpan1.1panPan2
COMMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11061,886,281 - 62,059,610 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1061,886,281 - 62,059,591 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1061,775,492 - 61,947,762 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01062,894,268 - 63,067,243 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1062,882,955 - 63,068,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11062,578,128 - 62,750,820 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01062,882,129 - 63,053,837 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01063,177,646 - 63,350,655 (+)NCBIUU_Cfam_GSD_1.0
Dog Cytomap10q26NCBI
Commd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629221,150,249 - 21,324,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364917,247,140 - 7,420,921 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364917,247,160 - 7,421,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COMMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl379,770,463 - 79,913,975 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1379,770,315 - 79,913,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2383,605,344 - 83,748,646 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COMMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11444,839,460 - 45,068,764 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1444,839,542 - 45,068,586 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604566,766,475 - 66,997,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013074059   ⟹   XP_012929513
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476211,302,730 - 11,407,057 (-)NCBI
RefSeq Acc Id: XM_021262557   ⟹   XP_021118216
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476211,402,484 - 11,407,074 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012929513 (Get FASTA)   NCBI Sequence Viewer  
  XP_021118216 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB15544 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012929513   ⟸   XM_013074059
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R1B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118216   ⟸   XM_021262557
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T8M1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro COMM UniProtKB/TrEMBL
  COMMD1_N UniProtKB/TrEMBL
  Murr1 UniProtKB/TrEMBL
KEGG Report hgl:101704455 UniProtKB/TrEMBL
NCBI Gene Commd1 ENTREZGENE
PANTHER COMM DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  COMM DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam COMM_domain UniProtKB/TrEMBL
  COMMD1_N UniProtKB/TrEMBL
PROSITE COMM UniProtKB/TrEMBL
UniProt A0AAX6R1B4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T8M1 ENTREZGENE, UniProtKB/TrEMBL