Sepsecs (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase) - Rat Genome Database

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Gene: Sepsecs (Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase) Heterocephalus glaber
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Symbol: Sepsecs
Name: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
RGD ID: 18905088
Description: ENCODES a protein that exhibits O-phosphoseryl-tRNA(Sec) selenium transferase activity (inferred); RNA binding (inferred); selenotransferase activity (inferred); INVOLVED IN conversion of seryl-tRNAsec to selenocys-tRNAsec (inferred); selenocysteine incorporation (inferred); translation (inferred); ASSOCIATED WITH cerebellar ataxia (ortholog); cerebellar hypoplasia (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: O-phosphoseryl-tRNA(Sec) selenium transferase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247557,211,584 - 7,250,748 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247557,211,598 - 7,250,748 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sepsecs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247557,211,584 - 7,250,748 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247557,211,598 - 7,250,748 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SEPSECS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,120,014 - 25,160,582 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl425,120,014 - 25,160,550 (-)EnsemblGRCh38hg38GRCh38
GRCh37425,121,636 - 25,162,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36424,732,820 - 24,771,083 (-)NCBINCBI36Build 36hg18NCBI36
Celera425,570,424 - 25,611,003 (-)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,462,251 - 24,502,807 (-)NCBIHuRef
CHM1_1425,120,960 - 25,161,508 (-)NCBICHM1_1
T2T-CHM13v2.0425,101,930 - 25,142,501 (-)NCBIT2T-CHM13v2.0
Sepsecs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39552,797,431 - 52,827,104 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl552,797,429 - 52,827,050 (-)EnsemblGRCm39 Ensembl
GRCm38552,640,089 - 52,669,764 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl552,640,087 - 52,669,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv37553,034,646 - 53,060,940 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36552,931,655 - 52,957,949 (-)NCBIMGSCv36mm8
Celera550,018,495 - 50,044,811 (-)NCBICelera
Cytogenetic Map5C1NCBI
cM Map528.44NCBI
Sepsecs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,524,287 - 62,554,529 (+)NCBIGRCr8
mRatBN7.21458,311,484 - 58,341,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1458,311,499 - 58,341,740 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1462,717,316 - 62,747,525 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01464,030,850 - 64,061,038 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,427,595 - 60,457,783 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,657,730 - 60,687,950 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,657,686 - 60,687,958 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,774,968 - 60,804,615 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1457,410,554 - 57,440,746 (+)NCBICelera
Cytogenetic Map14q11NCBI
Sepsecs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544319,822,811 - 19,863,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544319,759,772 - 19,859,188 (+)NCBIChiLan1.0ChiLan1.0
SEPSECS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2325,366,640 - 25,407,835 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1425,557,647 - 25,601,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0419,517,552 - 19,558,454 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1424,802,260 - 24,842,816 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl424,802,260 - 24,842,816 (-)Ensemblpanpan1.1panPan2
SEPSECS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1385,071,011 - 85,106,272 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl385,069,742 - 85,102,347 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha387,581,301 - 87,617,670 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0386,042,457 - 86,079,026 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl386,042,315 - 86,079,014 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1385,175,693 - 85,212,054 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0385,280,327 - 85,316,666 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,666,236 - 85,702,832 (+)NCBIUU_Cfam_GSD_1.0
Sepsecs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,634,482 - 50,667,254 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364774,336,059 - 4,368,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364774,335,945 - 4,368,117 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPSECS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl819,097,456 - 19,136,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1819,097,788 - 19,162,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2819,354,106 - 19,412,899 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEPSECS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12725,202,150 - 25,242,782 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2725,202,506 - 25,243,330 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604771,720,135 - 71,758,892 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000007263   ⟹   ENSHGLP00000007178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247557,211,584 - 7,250,748 (+)Ensembl
RefSeq Acc Id: XM_004847198   ⟹   XP_004847255
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247557,211,598 - 7,250,748 (+)NCBI
RefSeq Acc Id: XM_004847199   ⟹   XP_004847256
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247557,211,598 - 7,250,748 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847255 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847256 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB02636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007178
  ENSHGLP00100042488
GenBank Protein JAN97546 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004847255   ⟸   XM_004847198
- Peptide Label: isoform X1
- UniProtKB: G5B024 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847256   ⟸   XM_004847199
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000007178   ⟸   ENSHGLT00000007263


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005236 Ensembl, ENTREZGENE
  ENSHGLG00100045675 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000007263 ENTREZGENE
  ENSHGLT00100058999 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
InterPro PyrdxlP-dep_Trfase UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  Sec-tRNA_Se_transferase UniProtKB/TrEMBL
  SepSecS/SepCysS UniProtKB/TrEMBL
KEGG Report hgl:101700995 UniProtKB/TrEMBL
NCBI Gene Sepsecs ENTREZGENE
PANTHER O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE UniProtKB/TrEMBL
  PTHR12944 UniProtKB/TrEMBL
Pfam SepSecS UniProtKB/TrEMBL
PIRSF SepSecS UniProtKB/TrEMBL
Superfamily-SCOP SSF53383 UniProtKB/TrEMBL
UniProt G5B024 ENTREZGENE, UniProtKB/TrEMBL