Sdf2 (stromal cell derived factor 2) - Rat Genome Database

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Gene: Sdf2 (stromal cell derived factor 2) Heterocephalus glaber
Analyze
Symbol: Sdf2
Name: stromal cell derived factor 2
RGD ID: 18904967
Description: ENCODES a protein that exhibits misfolded protein binding (inferred); INVOLVED IN chaperone cofactor-dependent protein refolding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); protein folding chaperone complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stromal cell-derived factor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,226,025 - 1,238,016 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,230,035 - 1,237,974 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Sdf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247861,226,025 - 1,238,016 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247861,230,035 - 1,237,974 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SDF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,648,346 - 28,662,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,648,346 - 28,662,189 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,975,364 - 26,989,212 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,999,734 - 24,013,060 (-)NCBINCBI36Build 36hg18NCBI36
Build 341723,999,733 - 24,013,060NCBI
Celera1723,834,634 - 23,847,960 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1723,183,968 - 23,197,841 (-)NCBIHuRef
CHM1_11727,037,846 - 27,051,679 (-)NCBICHM1_1
T2T-CHM13v2.01729,591,070 - 29,604,958 (-)NCBIT2T-CHM13v2.0
Sdf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,136,817 - 78,146,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,136,572 - 78,146,322 (+)EnsemblGRCm39 Ensembl
GRCm381178,245,746 - 78,255,496 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,245,746 - 78,255,496 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,059,248 - 78,068,998 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,884,296 - 78,894,036 (+)NCBIMGSCv36mm8
MGSCv361178,061,941 - 78,071,681 (+)NCBIMGSCv36mm8
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Sdf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,638,634 - 63,649,109 (+)NCBIGRCr8
mRatBN7.21063,140,563 - 63,151,038 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,140,563 - 63,201,109 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1067,772,847 - 67,783,322 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,278,202 - 67,288,677 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01062,749,268 - 62,759,764 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,507,364 - 65,517,839 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,507,364 - 65,517,838 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,119,398 - 66,129,873 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,378,703 - 64,389,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,392,334 - 64,402,801 (-)NCBI
Celera1062,118,249 - 62,128,724 (+)NCBICelera
Cytogenetic Map10q25NCBI
Sdf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,497,611 - 4,506,224 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,497,611 - 4,506,224 (+)NCBIChiLan1.0ChiLan1.0
SDF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21935,797,303 - 35,810,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,677,585 - 37,690,985 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,113,057 - 28,126,610 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,617,411 - 28,630,925 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,617,411 - 28,630,925 (+)Ensemblpanpan1.1panPan2
SDF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,849,528 - 42,859,026 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,850,063 - 42,858,984 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,005,835 - 42,015,335 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,667,969 - 43,677,493 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,667,386 - 43,677,818 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,451,447 - 42,460,936 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,743,661 - 42,753,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,821,435 - 42,830,931 (-)NCBIUU_Cfam_GSD_1.0
Sdf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,991,444 - 42,000,421 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,869,389 - 4,878,344 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,869,389 - 4,878,365 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,896,728 - 44,907,090 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,896,937 - 44,907,120 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,881,807 - 46,891,983 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SDF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,418,480 - 22,432,055 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,419,116 - 22,431,583 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660757,693,089 - 7,706,243 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000025150   ⟹   ENSHGLP00000024928
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247861,226,025 - 1,238,016 (-)Ensembl
RefSeq Acc Id: XM_004857001   ⟹   XP_004857058
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247861,230,035 - 1,237,974 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857058 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB13315 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024928
  ENSHGLP00000036444
  ENSHGLP00100030702
GenBank Protein JAN97948 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004857058   ⟸   XM_004857001
- UniProtKB: G5BVH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000024928   ⟸   ENSHGLT00000025150


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017764 Ensembl, ENTREZGENE
  ENSHGLG00000038286 UniProtKB/TrEMBL
  ENSHGLG00100043048 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000025150 ENTREZGENE
  ENSHGLT00000076034 UniProtKB/TrEMBL
  ENSHGLT00100093355 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
InterPro MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
KEGG Report hgl:101712308 UniProtKB/TrEMBL
NCBI Gene Sdf2 ENTREZGENE
PANTHER STROMAL CELL-DERIVED FACTOR 2 UniProtKB/TrEMBL
  STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN UniProtKB/TrEMBL
Pfam MIR UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt G5BVH9 ENTREZGENE, UniProtKB/TrEMBL