Rraga (Ras related GTP binding A) - Rat Genome Database

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Gene: Rraga (Ras related GTP binding A) Heterocephalus glaber
Analyze
Symbol: Rraga
Name: Ras related GTP binding A
RGD ID: 18904876
Description: ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN cellular response to amino acid starvation (inferred); cellular response to amino acid stimulus (inferred); cellular response to nutrient levels (inferred); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN GATOR1 complex (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ras-related GTP-binding protein A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473623,035,836 - 23,049,574 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rraga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473623,035,836 - 23,049,574 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RRAGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38919,049,427 - 19,051,025 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl919,049,427 - 19,051,025 (+)EnsemblGRCh38hg38GRCh38
GRCh37919,049,425 - 19,051,023 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36919,039,372 - 19,041,023 (+)NCBINCBI36Build 36hg18NCBI36
Build 34919,039,371 - 19,041,019NCBI
Celera918,975,567 - 18,977,218 (+)NCBICelera
Cytogenetic Map9p22.1NCBI
HuRef919,010,976 - 19,012,627 (+)NCBIHuRef
CHM1_1919,049,357 - 19,051,008 (+)NCBICHM1_1
T2T-CHM13v2.0919,062,292 - 19,063,890 (+)NCBIT2T-CHM13v2.0
Rraga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39486,493,910 - 86,495,522 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl486,493,905 - 86,495,522 (+)EnsemblGRCm39 Ensembl
GRCm38486,575,673 - 86,577,285 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl486,575,668 - 86,577,285 (+)EnsemblGRCm38mm10GRCm38
MGSCv37486,221,577 - 86,223,189 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36486,046,917 - 86,048,516 (+)NCBIMGSCv36mm8
Celera485,090,453 - 85,092,065 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map440.69NCBI
Rraga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85106,159,335 - 106,160,930 (+)NCBIGRCr8
mRatBN7.25101,113,341 - 101,114,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5101,112,859 - 101,114,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5103,494,750 - 103,496,346 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05105,285,292 - 105,286,888 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05105,318,424 - 105,320,020 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05104,941,067 - 104,942,662 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5104,941,066 - 104,942,662 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05108,928,874 - 108,930,469 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45105,659,659 - 105,661,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15105,664,899 - 105,666,476 (+)NCBI
Celera599,598,082 - 99,599,677 (+)NCBICelera
Cytogenetic Map5q31NCBI
Rraga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543421,509,529 - 21,510,470 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543421,509,528 - 21,510,885 (+)NCBIChiLan1.0ChiLan1.0
RRAGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211105,486,096 - 105,488,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19105,492,082 - 105,495,742 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0918,868,781 - 18,870,356 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1919,362,181 - 19,363,964 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl919,362,599 - 19,363,540 (+)Ensemblpanpan1.1panPan2
RRAGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11138,886,990 - 38,888,634 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1138,886,397 - 38,888,184 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1137,545,897 - 37,547,387 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01139,820,183 - 39,821,680 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1139,820,017 - 39,821,680 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11138,513,447 - 38,514,944 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01138,308,366 - 38,309,857 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01138,945,442 - 38,946,939 (+)NCBIUU_Cfam_GSD_1.0
Rraga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947153,322,322 - 153,323,975 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936652991,832 - 993,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RRAGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1203,772,759 - 203,774,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11203,772,063 - 203,774,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21227,419,614 - 227,421,440 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RRAGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11260,669,841 - 60,671,482 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603848,795,138 - 48,796,787 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004838328   ⟹   XP_004838385
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473623,036,250 - 23,049,574 (+)NCBI
RefSeq Acc Id: XR_002392502
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473623,035,836 - 23,041,518 (+)NCBI
RefSeq Acc Id: XR_002392503
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473623,035,868 - 23,039,237 (+)NCBI
RefSeq Acc Id: XR_002392504
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473623,035,868 - 23,039,237 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004838385 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03514 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000055515
  ENSHGLP00000058576
  ENSHGLP00100058061
GenBank Protein JAN97285 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004838385   ⟸   XM_004838328
- UniProtKB: A0A0N8ESS7 (UniProtKB/TrEMBL),   G5B2K3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000037556 UniProtKB/TrEMBL
  ENSHGLG00100045345 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000061759 UniProtKB/TrEMBL
  ENSHGLT00000075597 UniProtKB/TrEMBL
  ENSHGLT00100076659 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.190 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro Gtr1_RagA UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RagA/B UniProtKB/TrEMBL
KEGG Report hgl:101720836 UniProtKB/TrEMBL
NCBI Gene Rraga ENTREZGENE
PANTHER PTHR11259 UniProtKB/TrEMBL
  RAS-RELATED GTP-BINDING PROTEIN A UniProtKB/TrEMBL
Pfam Gtr1_RagA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0N8ESS7 ENTREZGENE, UniProtKB/TrEMBL
  G5B2K3 ENTREZGENE, UniProtKB/TrEMBL