Acsm1 (acyl-CoA synthetase medium chain family member 1) - Rat Genome Database

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Gene: Acsm1 (acyl-CoA synthetase medium chain family member 1) Heterocephalus glaber
Analyze
Symbol: Acsm1
Name: acyl-CoA synthetase medium chain family member 1
RGD ID: 18904410
Description: ENCODES a protein that exhibits benzoate-CoA ligase activity (ortholog); butyrate-CoA ligase activity (ortholog); decanoate-CoA ligase activity (ortholog); INVOLVED IN fatty acid biosynthetic process (ortholog); PARTICIPATES IN butanoate metabolic pathway; fatty acid beta degradation pathway; valproic acid pharmacokinetics pathway; ASSOCIATED WITH genetic disease (ortholog); Lung Neoplasms (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Acyl-coenzyme A synthetase ACSM1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247823,809,421 - 3,849,777 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247823,804,627 - 3,846,949 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Acsm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247823,809,421 - 3,849,777 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247823,804,627 - 3,846,949 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ACSM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381620,623,235 - 20,697,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1620,623,235 - 20,698,890 (-)EnsemblGRCh38hg38GRCh38
GRCh371620,634,557 - 20,709,002 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361620,542,060 - 20,610,079 (-)NCBINCBI36Build 36hg18NCBI36
Build 341620,542,181 - 20,610,079NCBI
Celera1619,944,784 - 20,012,792 (-)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1619,170,264 - 19,238,259 (-)NCBIHuRef
CHM1_11620,721,797 - 20,789,834 (-)NCBICHM1_1
T2T-CHM13v2.01620,554,185 - 20,628,601 (-)NCBIT2T-CHM13v2.0
Acsm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397119,217,035 - 119,261,738 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7119,206,249 - 119,261,738 (+)EnsemblGRCm39 Ensembl
GRCm387119,617,757 - 119,662,515 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7119,607,026 - 119,662,515 (+)EnsemblGRCm38mm10GRCm38
MGSCv377126,761,337 - 126,806,029 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367119,408,975 - 119,453,664 (+)NCBIMGSCv36mm8
Celera7119,535,540 - 119,581,084 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map764.02NCBI
Acsm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,417,052 - 183,451,897 (+)NCBIGRCr8
mRatBN7.21173,985,715 - 174,020,565 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,984,672 - 174,025,495 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,301,183 - 182,336,051 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01189,487,285 - 189,522,089 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,223,654 - 182,259,566 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01189,359,374 - 189,395,277 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1189,289,957 - 189,395,276 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01196,296,445 - 196,332,449 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11178,070,783 - 178,079,570 (+)NCBI
Celera1171,736,091 - 171,771,062 (+)NCBICelera
Cytogenetic Map1q35NCBI
Acsm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,133,308 - 4,174,330 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,133,817 - 4,173,932 (+)NCBIChiLan1.0ChiLan1.0
LOC100972336
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21821,839,853 - 21,904,781 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11626,360,417 - 26,419,836 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01617,676,986 - 17,735,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11620,715,678 - 20,758,813 (-)NCBIpanpan1.1PanPan1.1panPan2
ACSM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1518,784,055 - 18,841,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl518,784,210 - 18,842,609 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606811,062,924 - 11,121,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000010264   ⟹   ENSHGLP00000010150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247823,809,421 - 3,849,777 (+)Ensembl
RefSeq Acc Id: XM_004855837   ⟹   XP_004855894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247823,804,627 - 3,846,949 (+)NCBI
RefSeq Acc Id: XM_004855838   ⟹   XP_004855895
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247823,804,629 - 3,846,949 (+)NCBI
RefSeq Acc Id: XM_013076356   ⟹   XP_012931810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247823,804,649 - 3,846,949 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004855894 (Get FASTA)   NCBI Sequence Viewer  
  XP_004855895 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931810 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04158 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010150
GenBank Protein JAO01522 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004855894   ⟸   XM_004855837
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004855895   ⟸   XM_004855838
- Peptide Label: isoform X2
- UniProtKB: G5B4E7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012931810   ⟸   XM_013076356
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000010150   ⟸   ENSHGLT00000010264


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007282 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010264 ENTREZGENE
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
NCBI Gene Acsm1 ENTREZGENE
PANTHER ACYL-COENZYME A SYNTHETASE UniProtKB/TrEMBL
  ACYL-COENZYME A SYNTHETASE ACSM1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt G5B4E7 ENTREZGENE, UniProtKB/TrEMBL