Spic (Spi-C transcription factor) - Rat Genome Database

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Gene: Spic (Spi-C transcription factor) Heterocephalus glaber
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Symbol: Spic
Name: Spi-C transcription factor
RGD ID: 18903868
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Spi-C transcription factor (Spi-1/PU.1 related); transcription factor Spi-C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247506,476,108 - 6,490,261 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spic
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247506,476,108 - 6,490,261 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPIC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,475,336 - 101,486,997 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,475,336 - 101,486,997 (+)EnsemblGRCh38hg38GRCh38
GRCh3712101,869,114 - 101,880,775 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,394,788 - 100,404,906 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412100,373,124 - 100,383,242NCBI
Celera12101,535,714 - 101,545,426 (+)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1298,930,755 - 98,940,945 (+)NCBIHuRef
CHM1_112101,836,565 - 101,847,522 (+)NCBICHM1_1
T2T-CHM13v2.012101,436,475 - 101,448,154 (+)NCBIT2T-CHM13v2.0
Spic
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,511,131 - 88,518,885 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,510,634 - 88,520,877 (-)EnsemblGRCm39 Ensembl
GRCm381088,675,269 - 88,683,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,674,772 - 88,685,015 (-)EnsemblGRCm38mm10GRCm38
MGSCv371088,138,014 - 88,145,768 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361088,105,076 - 88,112,821 (-)NCBIMGSCv36mm8
Celera1090,655,323 - 90,663,281 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1044.14NCBI
Spic
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,957,213 - 24,964,918 (-)NCBIGRCr8
mRatBN7.2723,069,815 - 23,077,517 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl723,069,821 - 23,077,548 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx725,064,374 - 25,072,061 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,227,072 - 27,234,765 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0727,004,124 - 27,011,811 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,225,721 - 29,233,452 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,225,727 - 29,233,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,331,304 - 29,339,005 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4725,354,400 - 25,362,070 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1725,375,040 - 25,384,163 (-)NCBI
Celera720,229,536 - 20,237,196 (-)NCBICelera
Cytogenetic Map7q13NCBI
Spic
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540536,946,395 - 36,957,418 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540536,946,481 - 36,956,472 (+)NCBIChiLan1.0ChiLan1.0
SPIC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,547,215 - 109,561,222 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,543,613 - 109,557,620 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,062,023 - 99,073,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,461,606 - 102,472,840 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,461,613 - 102,472,840 (+)Ensemblpanpan1.1panPan2
SPIC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,443,132 - 40,453,894 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,442,945 - 40,453,334 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1540,811,804 - 40,822,597 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,097,876 - 41,108,724 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,097,885 - 41,108,724 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,353,028 - 40,363,821 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,461,955 - 40,472,685 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01540,736,098 - 40,746,887 (+)NCBIUU_Cfam_GSD_1.0
Spic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,521,812 - 19,530,536 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493649212,532,389 - 12,539,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPIC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,726,360 - 82,795,864 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,724,322 - 82,793,527 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,754,444 - 86,757,898 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPIC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,714,929 - 96,746,938 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037148,256,949 - 148,268,949 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013072246   ⟹   XP_012927700
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247506,476,108 - 6,489,257 (-)NCBI
RefSeq Acc Id: XM_021258420   ⟹   XP_021114079
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247506,476,108 - 6,490,261 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012927700 (Get FASTA)   NCBI Sequence Viewer  
  XP_021114079 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021114079   ⟸   XM_021258420
RefSeq Acc Id: XP_012927700   ⟸   XM_013072246


Additional Information

Database Acc Id Source(s)
NCBI Gene Spic ENTREZGENE