Arap3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3) - Rat Genome Database

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Gene: Arap3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3) Heterocephalus glaber
Analyze
Symbol: Arap3
Name: ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
RGD ID: 18903394
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774881,708 - 905,690 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774881,162 - 907,310 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774881,708 - 905,690 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774881,162 - 907,310 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,653,402 - 141,682,230 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,653,401 - 141,682,230 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,032,969 - 141,061,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,013,152 - 141,041,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,013,153 - 141,041,984NCBI
Celera5137,109,696 - 137,138,526 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,177,475 - 136,206,231 (-)NCBIHuRef
CHM1_15140,466,257 - 140,495,264 (-)NCBICHM1_1
T2T-CHM13v2.05142,179,417 - 142,208,259 (-)NCBIT2T-CHM13v2.0
Arap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,105,676 - 38,132,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,105,681 - 38,132,022 (-)EnsemblGRCm39 Ensembl
GRCm381837,972,623 - 37,999,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,972,628 - 37,998,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,132,277 - 38,157,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,098,602 - 38,123,089 (-)NCBIMGSCv36mm8
Celera1839,316,005 - 39,340,938 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.85NCBI
Arap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,058,739 - 30,085,415 (-)NCBIGRCr8
mRatBN7.21829,806,214 - 29,834,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,807,536 - 29,833,555 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01831,112,083 - 31,138,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,112,623 - 31,136,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,800,119 - 30,825,636 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,893,720 - 30,916,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,920,906 - 30,943,620 (-)NCBI
Celera1829,452,116 - 29,478,222 (-)NCBICelera
Cytogenetic Map18p11NCBI
Arap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,099,651 - 12,121,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,098,009 - 12,121,722 (+)NCBIChiLan1.0ChiLan1.0
ARAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,902,257 - 136,930,773 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,041,803 - 135,070,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,014,286 - 137,042,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,126,866 - 143,153,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,127,414 - 143,153,318 (-)Ensemblpanpan1.1panPan2
ARAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,614,799 - 36,639,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,615,361 - 36,639,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,666,700 - 33,691,184 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,069,004 - 37,093,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,069,013 - 37,093,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,143,570 - 34,168,054 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,955,080 - 34,979,561 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,762,386 - 35,785,328 (-)NCBIUU_Cfam_GSD_1.0
Arap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,915,483 - 150,940,433 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,490,850 - 12,513,996 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,490,838 - 12,514,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,304,080 - 143,327,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,304,076 - 143,327,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,506,693 - 149,530,184 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,280,010 - 44,308,046 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,279,727 - 44,306,272 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,395,355 - 33,572,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000009825   ⟹   ENSHGLP00000009717
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624774881,708 - 905,690 (-)Ensembl
RefSeq Acc Id: XM_004854291   ⟹   XP_004854348
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774881,162 - 907,306 (-)NCBI
RefSeq Acc Id: XM_013075715   ⟹   XP_012931169
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774881,162 - 907,306 (-)NCBI
RefSeq Acc Id: XM_013075716   ⟹   XP_012931170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774881,162 - 907,310 (-)NCBI
RefSeq Acc Id: XM_013075717   ⟹   XP_012931171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774881,162 - 907,310 (-)NCBI
RefSeq Acc Id: XM_021266117   ⟹   XP_021121776
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774881,162 - 906,971 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004854348 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931169 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931170 (Get FASTA)   NCBI Sequence Viewer  
  XP_012931171 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121776 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009717
Reference Protein Sequences
RefSeq Acc Id: XP_012931171   ⟸   XM_013075717
- Peptide Label: isoform X4
RefSeq Acc Id: XP_012931170   ⟸   XM_013075716
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004854348   ⟸   XM_004854291
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012931169   ⟸   XM_013075715
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021121776   ⟸   XM_021266117
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000009717   ⟸   ENSHGLT00000009825


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006972 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009825 ENTREZGENE
NCBI Gene Arap3 ENTREZGENE