Rnf148 (ring finger protein 148) - Rat Genome Database

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Gene: Rnf148 (ring finger protein 148) Heterocephalus glaber
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Symbol: Rnf148
Name: ring finger protein 148
RGD ID: 18903275
Description: ENCODES a protein that exhibits metal ion binding (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478313,283,350 - 13,304,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Rnf148
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478313,283,350 - 13,304,463 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RNF148
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387122,701,668 - 122,702,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7122,701,668 - 122,702,922 (-)EnsemblGRCh38hg38GRCh38
GRCh377122,341,722 - 122,342,976 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367122,128,956 - 122,130,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 347121,935,670 - 121,936,972NCBI
Celera7117,146,021 - 117,147,322 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7116,704,606 - 116,705,907 (-)NCBIHuRef
CHM1_17122,275,021 - 122,276,322 (-)NCBICHM1_1
T2T-CHM13v2.07124,013,712 - 124,021,414 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27121,736,421 - 121,737,722 (-)NCBI
Rnf148
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39623,653,894 - 23,655,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl623,653,897 - 23,655,135 (-)EnsemblGRCm39 Ensembl
GRCm38623,653,895 - 23,655,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl623,653,898 - 23,655,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv37623,603,895 - 23,605,136 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36623,603,898 - 23,605,138 (-)NCBIMGSCv36mm8
Celera623,676,984 - 23,678,225 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map611.01NCBI
Rnf148
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8453,111,416 - 53,118,125 (-)NCBIGRCr8
mRatBN7.2452,145,798 - 52,152,508 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx457,125,862 - 57,132,587 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0453,046,890 - 53,053,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0451,475,891 - 51,482,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0450,687,159 - 50,693,869 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl450,687,311 - 50,693,869 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0450,467,597 - 50,474,307 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4450,029,841 - 50,036,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera447,337,224 - 47,344,120 (-)NCBICelera
Cytogenetic Map4q22NCBI
Rnf148
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554794,322,099 - 4,323,349 (-)NCBIChiLan1.0ChiLan1.0
RNF148
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26159,572,868 - 159,573,999 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1711,583,122 - 11,584,253 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07114,711,928 - 114,713,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17127,395,627 - 127,396,940 (-)NCBIpanpan1.1PanPan1.1panPan2
RNF148
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11460,421,841 - 60,423,148 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1459,842,644 - 59,843,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01460,461,628 - 60,462,933 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11460,551,506 - 60,552,811 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01460,179,018 - 60,180,322 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01460,556,957 - 60,558,262 (-)NCBIUU_Cfam_GSD_1.0
Rnf148
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511849,531,180 - 49,532,479 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366052,671,451 - 2,672,746 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF148
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11824,521,658 - 24,528,943 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,124,595 - 26,125,973 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF148
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12191,494,049 - 91,495,337 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2191,494,214 - 91,495,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604211,995,393 - 11,998,976 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_013076496   ⟹   XP_012931950
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478313,283,350 - 13,304,463 (+)NCBI
RefSeq Acc Id: XM_021237641   ⟹   XP_021093300
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478313,283,392 - 13,304,463 (+)NCBI
RefSeq Acc Id: XP_012931950   ⟸   XM_013076496
- UniProtKB: A0A0P6JD93 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093300   ⟸   XM_021237641
- UniProtKB: A0A0P6JD93 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000033439 UniProtKB/TrEMBL
  ENSHGLG00100009742 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000063420 UniProtKB/TrEMBL
  ENSHGLT00000067398 UniProtKB/TrEMBL
  ENSHGLT00000074943 UniProtKB/TrEMBL
  ENSHGLT00000077509 UniProtKB/TrEMBL
  ENSHGLT00100013311 UniProtKB/TrEMBL
  ENSHGLT00100065661 UniProtKB/TrEMBL
  ENSHGLT00100078959 UniProtKB/TrEMBL
  ENSHGLT00100084731 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
  3.50.30.30 UniProtKB/TrEMBL
InterPro PA_dom_sf UniProtKB/TrEMBL
  PA_domain UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report hgl:101706905 UniProtKB/TrEMBL
NCBI Gene Rnf148 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 UniProtKB/TrEMBL
  RING-H2 FINGER PROTEIN ATL43 UniProtKB/TrEMBL
Pfam PF02225 UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP PA domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A0P6JD93 ENTREZGENE, UniProtKB/TrEMBL