Sgca (sarcoglycan alpha) - Rat Genome Database

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Gene: Sgca (sarcoglycan alpha) Heterocephalus glaber
Analyze
Symbol: Sgca
Name: sarcoglycan alpha
RGD ID: 18902902
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN response to denervation involved in regulation of muscle adaptation (ortholog); skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); FOUND IN cell-cell junction (ortholog); dystroglycan complex (ortholog); membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-sarcoglycan
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,152,323 - 6,161,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,152,317 - 6,162,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sgca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,152,323 - 6,161,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,152,317 - 6,162,190 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SGCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,166,005 - 50,175,928 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,164,214 - 50,175,928 (+)EnsemblGRCh38hg38GRCh38
GRCh371748,243,366 - 48,253,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,598,390 - 45,608,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 341745,598,389 - 45,608,288NCBI
Celera1744,704,243 - 44,714,136 (+)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,610,997 - 43,621,963 (+)NCBIHuRef
CHM1_11748,307,684 - 48,317,607 (+)NCBICHM1_1
T2T-CHM13v2.01751,033,073 - 51,042,985 (+)NCBIT2T-CHM13v2.0
Sgca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,853,603 - 94,867,153 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,853,617 - 94,867,153 (-)EnsemblGRCm39 Ensembl
GRCm381194,962,777 - 94,976,327 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,962,791 - 94,976,327 (-)EnsemblGRCm38mm10GRCm38
MGSCv371194,824,136 - 94,837,641 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,779,298 - 94,792,417 (-)NCBIMGSCv36mm8
Celera11104,576,245 - 104,589,699 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Sgca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,397,158 - 80,416,165 (-)NCBIGRCr8
mRatBN7.21079,904,698 - 79,922,808 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,908,738 - 79,922,813 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,857,923 - 84,868,368 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01084,355,994 - 84,366,439 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,749,079 - 79,759,568 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,770,905 - 82,785,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,770,905 - 82,785,142 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,588,479 - 82,602,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,647,336 - 83,660,800 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,661,715 - 83,672,179 (-)NCBI
Celera1078,683,427 - 78,697,425 (-)NCBICelera
Cytogenetic Map10q26NCBI
Sgca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545111,490,891 - 11,501,618 (-)NCBIChiLan1.0ChiLan1.0
SGCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,354,448 - 66,364,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,161,163 - 71,171,092 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,255,807 - 44,266,182 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,130,330 - 49,141,188 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,130,332 - 49,141,188 (+)Ensemblpanpan1.1panPan2
SGCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,164,784 - 26,178,249 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,164,863 - 26,174,864 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,557,947 - 25,571,307 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,959,303 - 26,972,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,959,357 - 26,972,751 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,727,095 - 25,740,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,985,773 - 25,999,153 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,115,697 - 26,129,096 (+)NCBIUU_Cfam_GSD_1.0
Sgca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,592,429 - 25,604,990 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,468,935 - 11,482,468 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,470,155 - 11,482,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,356,777 - 26,371,600 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,356,691 - 26,368,561 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,395,353 - 26,406,984 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SGCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,160,402 - 43,173,368 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1643,160,401 - 43,170,109 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,875,847 - 13,888,809 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020094   ⟹   ENSHGLP00000019894
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247956,152,323 - 6,161,359 (+)Ensembl
RefSeq Acc Id: XM_004859681   ⟹   XP_004859738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247956,152,317 - 6,162,190 (+)NCBI
RefSeq Acc Id: XM_021240175   ⟹   XP_021095834
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247956,152,317 - 6,162,190 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004859738 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019894
GenBank Protein JAN99763 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004859738   ⟸   XM_004859681
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K460 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095834   ⟸   XM_021240175
- Peptide Label: isoform X2
- UniProtKB: A0A0P6K460 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019894   ⟸   ENSHGLT00000020094


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014247 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020094 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Cadg UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Sarcoglycan_alpha/epsilon UniProtKB/TrEMBL
  Sarcoglycan_C UniProtKB/TrEMBL
  Sarcoglycan_N UniProtKB/TrEMBL
NCBI Gene Sgca ENTREZGENE
PANTHER PTHR10132 UniProtKB/TrEMBL
  PTHR10132:SF16 UniProtKB/TrEMBL
Pfam Sarcoglycan_2 UniProtKB/TrEMBL
  Sarcoglycan_2_C UniProtKB/TrEMBL
SMART CADG UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0P6K460 ENTREZGENE, UniProtKB/TrEMBL