Ypel4 (yippee like 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ypel4 (yippee like 4) Heterocephalus glaber
Analyze
Symbol: Ypel4 (Ensembl: YPEL)
Name: yippee like 4
RGD ID: 18902483
Description: INVOLVED IN negative regulation of erythrocyte clearance (ortholog); negative regulation of erythrocyte differentiation (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein yippee-like 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,067,183 - 3,074,668 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,067,184 - 3,074,668 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Ypel4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,067,183 - 3,074,668 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,067,184 - 3,074,668 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
YPEL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,645,087 - 57,649,912 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,645,087 - 57,649,944 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,412,560 - 57,417,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,169,137 - 57,173,993 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,169,136 - 57,173,993NCBI
Celera1154,769,044 - 54,773,901 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1153,761,307 - 53,766,337 (-)NCBIHuRef
CHM1_11157,278,768 - 57,283,625 (-)NCBICHM1_1
T2T-CHM13v2.01157,595,261 - 57,603,883 (-)NCBIT2T-CHM13v2.0
Ypel4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,564,355 - 84,568,999 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,564,402 - 84,568,999 (+)EnsemblGRCm39 Ensembl
GRCm38284,734,011 - 84,738,655 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,734,058 - 84,738,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,574,361 - 84,578,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,535,043 - 84,538,716 (+)NCBIMGSCv36mm8
Celera286,329,399 - 86,333,068 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Ypel4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,222,060 - 90,227,395 (+)NCBIGRCr8
mRatBN7.2369,815,373 - 69,820,708 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,816,175 - 69,820,707 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,197,978 - 73,202,512 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,796,640 - 81,801,174 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,555,560 - 79,560,084 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,134,719 - 72,139,204 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,134,731 - 72,141,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,655,360 - 78,659,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4367,945,706 - 67,947,569 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera369,171,695 - 69,176,228 (+)NCBICelera
Cytogenetic Map3q24NCBI
Ypel4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,580,518 - 2,588,753 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,580,518 - 2,588,753 (-)NCBIChiLan1.0ChiLan1.0
YPEL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,801,465 - 58,806,316 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,821,425 - 59,826,276 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,885,902 - 52,890,753 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,356,813 - 56,361,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,356,813 - 56,360,002 (-)Ensemblpanpan1.1panPan2
YPEL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,535,792 - 38,541,183 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,539,190 - 38,540,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,082,881 - 38,087,589 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,218,290 - 39,222,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,218,398 - 39,222,681 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,801,383 - 38,806,089 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,374,404 - 38,379,112 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,005,150 - 39,009,857 (+)NCBIUU_Cfam_GSD_1.0
Ypel4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,763,521 - 14,768,524 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365814,877,332 - 4,883,364 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365814,877,357 - 4,882,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YPEL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,289,402 - 13,294,233 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,289,369 - 13,294,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2212,922,576 - 12,927,430 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YPEL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,579,397 - 15,584,988 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl115,579,766 - 15,587,655 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038112,931,259 - 112,936,099 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014195   ⟹   ENSHGLP00000014052
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248643,067,183 - 3,074,668 (+)Ensembl
RefSeq Acc Id: XM_004869772   ⟹   XP_004869829
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,070,718 - 3,074,668 (+)NCBI
RefSeq Acc Id: XM_004869773   ⟹   XP_004869830
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248643,067,184 - 3,074,668 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869829 (Get FASTA)   NCBI Sequence Viewer  
  XP_004869830 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10157 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014052
RefSeq Acc Id: XP_004869830   ⟸   XM_004869773
- UniProtKB: G5BLJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869829   ⟸   XM_004869772
- UniProtKB: G5BLJ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014052   ⟸   ENSHGLT00000014195


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010034 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014195 ENTREZGENE
InterPro Yippee UniProtKB/TrEMBL
  Yippee/Mis18/Cereblon UniProtKB/TrEMBL
  Yippee_fam UniProtKB/TrEMBL
KEGG Report hgl:101724315 UniProtKB/TrEMBL
NCBI Gene Ypel4 ENTREZGENE
PANTHER PROTEIN YIPPEE-LIKE 4 UniProtKB/TrEMBL
  PTHR13848 UniProtKB/TrEMBL
Pfam Yippee-Mis18 UniProtKB/TrEMBL
PROSITE YIPPEE UniProtKB/TrEMBL
UniProt G5BLJ6 ENTREZGENE, UniProtKB/TrEMBL