Hoxa9 (homeobox A9) - Rat Genome Database

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Gene: Hoxa9 (homeobox A9) Heterocephalus glaber
Analyze
Symbol: Hoxa9
Name: homeobox A9
RGD ID: 18902386
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); definitive hemopoiesis (ortholog); embryonic forelimb morphogenesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); genetic disease (ortholog); hand-foot-genital syndrome (ortholog); FOUND IN nucleoplasm (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-A9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,439,217 - 3,443,449 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,440,328 - 3,443,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Hoxa9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,439,217 - 3,443,449 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,440,328 - 3,443,362 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HOXA9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,162,438 - 27,165,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,162,438 - 27,175,180 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,202,057 - 27,205,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,168,582 - 27,171,674 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,975,297 - 26,978,389NCBI
Celera727,190,996 - 27,194,088 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,082,468 - 27,085,560 (-)NCBIHuRef
CHM1_1727,201,773 - 27,204,865 (-)NCBICHM1_1
T2T-CHM13v2.0727,298,433 - 27,301,532 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,253,232 - 27,256,324 (-)NCBI
Hoxa9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,200,077 - 52,203,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,200,080 - 52,208,069 (-)EnsemblGRCm39 Ensembl
GRCm38652,223,097 - 52,227,370 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,223,100 - 52,231,089 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,174,053 - 52,177,369 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,153,637 - 52,156,953 (-)NCBIMGSCv36mm8
Celera652,745,693 - 52,749,009 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,653,847 - 82,659,958 (-)NCBIGRCr8
mRatBN7.2481,323,235 - 81,329,344 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,323,382 - 81,326,358 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,545,019 - 86,548,222 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,320,408 - 82,323,613 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,747,545 - 80,750,729 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,191,804 - 82,199,025 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,192,963 - 82,194,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,858,635 - 146,861,993 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4480,524,246 - 80,526,491NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1480,802,831 - 80,804,796NCBI
Celera476,213,941 - 76,221,355 (-)NCBICelera
Cytogenetic Map4q24NCBI
Hoxa9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,856,661 - 28,861,803 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,856,661 - 28,861,803 (-)NCBIChiLan1.0ChiLan1.0
HOXA9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,991,641 - 31,998,248 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,316,365 - 80,319,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,806,942 - 27,810,304 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,406,624 - 27,409,984 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,405,931 - 27,409,984 (-)Ensemblpanpan1.1panPan2
HOXA9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,336,829 - 40,340,533 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,337,999 - 40,339,923 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,767,687 - 39,772,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,275,489 - 40,280,356 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,275,952 - 40,278,578 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,389,486 - 40,394,356 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,074,555 - 40,079,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,433,160 - 40,438,030 (-)NCBIUU_Cfam_GSD_1.0
Hoxa9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,578,230 - 84,583,058 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,789,961 - 3,793,845 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,789,961 - 3,793,116 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,408,375 - 45,411,509 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,404,594 - 45,411,512 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,039,919 - 50,044,537 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,199,573 - 31,206,455 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,203,422 - 31,206,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604273,527,386 - 73,530,633 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004839504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01016637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000009537   ⟹   ENSHGLP00000009432
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247393,439,217 - 3,443,449 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000009538   ⟹   ENSHGLP00000009433
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247393,440,377 - 3,440,870 (+)Ensembl
RefSeq Acc Id: XM_004839504   ⟹   XP_004839561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247393,440,328 - 3,443,362 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004839561 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009432
Reference Protein Sequences
RefSeq Acc Id: XP_004839561   ⟸   XM_004839504
- UniProtKB: G5BD56 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000009432   ⟸   ENSHGLT00000009537
RefSeq Acc Id: ENSHGLP00000009433   ⟸   ENSHGLT00000009538


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006764 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009537 ENTREZGENE
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Hox9_activation_N UniProtKB/TrEMBL
  HXA9/HXB9/HXC9 UniProtKB/TrEMBL
NCBI Gene Hoxa9 ENTREZGENE
PANTHER AGAP004664-PA UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-A9 UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
  Hox9_act UniProtKB/TrEMBL
PIRSF Homeobox_Hox9 UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain-like UniProtKB/TrEMBL
UniProt G5BD56 ENTREZGENE, UniProtKB/TrEMBL