Slc10a4 (solute carrier family 10 member 4) - Rat Genome Database

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Gene: Slc10a4 (solute carrier family 10 member 4) Heterocephalus glaber
Analyze
Symbol: Slc10a4
Name: solute carrier family 10 member 4
RGD ID: 18901882
Description: INVOLVED IN adult behavior (ortholog); regulation of neurotransmitter loading into synaptic vesicle (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cholinergic synapse (ortholog); dopaminergic synapse (ortholog); serotonergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium/bile acid cotransporter 4; solute carrier family 10 (sodium/bile acid cotransporter family), member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,489,683 - 18,495,507 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,489,636 - 18,495,607 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc10a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476118,489,683 - 18,495,507 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476118,489,636 - 18,495,607 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC10A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38448,483,343 - 48,489,526 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl448,483,343 - 48,489,526 (+)EnsemblGRCh38hg38GRCh38
GRCh37448,485,360 - 48,491,543 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36448,180,206 - 48,185,921 (+)NCBINCBI36Build 36hg18NCBI36
Build 34448,326,376 - 48,332,092NCBI
Celera448,934,151 - 48,940,332 (+)NCBICelera
Cytogenetic Map4p11NCBI
HuRef447,805,548 - 47,811,582 (+)NCBIHuRef
CHM1_1448,484,515 - 48,490,696 (+)NCBICHM1_1
T2T-CHM13v2.0448,450,381 - 48,456,560 (+)NCBIT2T-CHM13v2.0
Slc10a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,164,247 - 73,170,298 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,164,226 - 73,170,298 (+)EnsemblGRCm39 Ensembl
GRCm38573,006,904 - 73,012,955 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,006,883 - 73,012,955 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,398,143 - 73,404,194 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,286,039 - 73,292,090 (+)NCBIMGSCv36mm8
Celera570,259,481 - 70,265,532 (+)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.44NCBI
Slc10a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,552,170 - 35,557,884 (-)NCBIGRCr8
mRatBN7.21435,198,149 - 35,203,863 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1435,197,886 - 35,203,729 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,562,389 - 35,567,613 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,867,146 - 36,872,370 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01435,355,472 - 35,360,696 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,764,839 - 37,770,059 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,764,839 - 37,770,059 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,575,344 - 37,580,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,603,484 - 37,608,704 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,605,918 - 37,611,139 (-)NCBI
Celera1434,453,572 - 34,458,796 (-)NCBICelera
Cytogenetic Map14p11NCBI
Slc10a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544719,189,262 - 19,194,412 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544719,189,516 - 19,194,982 (-)NCBIChiLan1.0ChiLan1.0
SLC10A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2379,375,193 - 79,381,360 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1479,636,679 - 79,642,846 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0473,663,681 - 73,669,852 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1484,391,103 - 84,402,422 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl484,391,103 - 84,402,422 (-)Ensemblpanpan1.1panPan2
SLC10A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,293,956 - 44,299,529 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,277,094 - 44,299,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,247,450 - 44,253,276 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01344,898,294 - 44,903,727 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1344,898,966 - 44,903,921 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11344,572,619 - 44,578,253 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,105,676 - 44,113,317 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01344,987,655 - 44,993,299 (+)NCBIUU_Cfam_GSD_1.0
Slc10a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,795,835 - 31,801,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,496,386 - 14,502,957 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,496,386 - 14,502,313 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC10A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,378,872 - 38,385,863 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,378,878 - 38,385,748 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2840,414,352 - 40,419,674 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC10A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,763,028 - 1,769,246 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,762,568 - 1,769,056 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604747,765,658 - 47,771,896 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004849847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01042079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000019101   ⟹   ENSHGLP00000018912
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476118,489,683 - 18,495,507 (-)Ensembl
RefSeq Acc Id: XM_004849847   ⟹   XP_004849904
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476118,489,636 - 18,495,607 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018912
Reference Protein Sequences
RefSeq Acc Id: XP_004849904   ⟸   XM_004849847
RefSeq Acc Id: ENSHGLP00000018912   ⟸   ENSHGLT00000019101


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013563 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019101 ENTREZGENE
NCBI Gene Slc10a4 ENTREZGENE