Tacc3 (transforming acidic coiled-coil containing protein 3) - Rat Genome Database

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Gene: Tacc3 (transforming acidic coiled-coil containing protein 3) Heterocephalus glaber
Analyze
Symbol: Tacc3
Name: transforming acidic coiled-coil containing protein 3
RGD ID: 18901704
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); cell population proliferation (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH cherubism (ortholog); endometrial carcinoma (ortholog); genetic disease (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transforming acidic coiled-coil-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,683,137 - 25,692,504 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,683,314 - 25,695,102 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tacc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,683,137 - 25,692,504 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,683,314 - 25,695,102 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TACC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3841,721,521 - 1,745,171 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl41,712,858 - 1,745,171 (+)EnsemblGRCh38hg38GRCh38
GRCh3741,723,248 - 1,746,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,693,062 - 1,716,696 (+)NCBINCBI36Build 36hg18NCBI36
Build 3441,690,496 - 1,714,126NCBI
Celera41,634,312 - 1,657,939 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef41,666,111 - 1,689,797 (+)NCBIHuRef
CHM1_141,721,189 - 1,744,883 (+)NCBICHM1_1
T2T-CHM13v2.041,719,323 - 1,742,998 (+)NCBIT2T-CHM13v2.0
Tacc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,814,808 - 33,836,331 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,815,472 - 33,836,339 (+)EnsemblGRCm39 Ensembl
GRCm38533,658,128 - 33,672,203 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,658,128 - 33,678,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv37534,000,796 - 34,014,847 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,975,519 - 33,989,055 (+)NCBIMGSCv36mm8
Celera531,134,263 - 31,148,314 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.83NCBI
Tacc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81481,275,755 - 81,289,894 (-)NCBIGRCr8
mRatBN7.21477,051,209 - 77,065,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,051,215 - 77,065,219 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1481,503,501 - 81,517,450 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01482,744,101 - 82,758,050 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01479,189,401 - 79,203,350 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01482,336,283 - 82,350,069 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,336,324 - 82,347,679 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,025,668 - 83,039,454 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41482,746,460 - 82,760,864 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11482,748,850 - 82,763,255 (-)NCBI
Celera1475,974,760 - 75,988,702 (-)NCBICelera
Cytogenetic Map14q21NCBI
Tacc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514975,176 - 986,686 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514973,457 - 986,640 (+)NCBIChiLan1.0ChiLan1.0
TACC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v232,049,942 - 2,074,164 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,985,172 - 2,009,451 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,858,595 - 1,882,727 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,772,836 - 1,796,019 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,772,836 - 1,796,019 (+)Ensemblpanpan1.1panPan2
TACC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1362,368,641 - 62,380,898 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl362,368,642 - 62,381,024 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,886,359 - 64,898,622 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0362,844,062 - 62,856,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl362,844,062 - 62,856,561 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1362,337,573 - 62,349,822 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0362,541,079 - 62,553,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0362,900,317 - 62,912,580 (-)NCBIUU_Cfam_GSD_1.0
Tacc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528567,947,880 - 67,964,536 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,648,716 - 21,665,625 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,648,958 - 21,665,855 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TACC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8824,999 - 837,322 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18825,433 - 835,425 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28296,955 - 306,651 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TACC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,021,970 - 47,045,571 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,021,965 - 47,045,223 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660513,398,606 - 3,422,223 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000006766   ⟹   ENSHGLP00000006684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475525,683,137 - 25,692,504 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000006767   ⟹   ENSHGLP00000006685
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475525,683,137 - 25,692,504 (-)Ensembl
RefSeq Acc Id: XM_004847428   ⟹   XP_004847485
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475525,683,314 - 25,694,339 (-)NCBI
RefSeq Acc Id: XM_004847429   ⟹   XP_004847486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475525,683,314 - 25,694,339 (-)NCBI
RefSeq Acc Id: XM_013073136   ⟹   XP_012928590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475525,683,314 - 25,695,102 (-)NCBI
RefSeq Acc Id: XM_013073138   ⟹   XP_012928592
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475525,683,314 - 25,694,339 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004847485 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847486 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928590 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928592 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000006684
  ENSHGLP00000006685
Reference Protein Sequences
RefSeq Acc Id: XP_012928590   ⟸   XM_013073136
- Peptide Label: isoform X1
- UniProtKB: G5BCI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847486   ⟸   XM_004847429
- Peptide Label: isoform X2
- UniProtKB: G5BCI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928592   ⟸   XM_013073138
- Peptide Label: isoform X3
- UniProtKB: G5BCI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847485   ⟸   XM_004847428
- Peptide Label: isoform X1
- UniProtKB: G5BCI8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000006684   ⟸   ENSHGLT00000006766
RefSeq Acc Id: ENSHGLP00000006685   ⟸   ENSHGLT00000006767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004881 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000006766 ENTREZGENE
  ENSHGLT00000006767 ENTREZGENE
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro TACC UniProtKB/TrEMBL
  TACC_C UniProtKB/TrEMBL
NCBI Gene Tacc3 ENTREZGENE
PANTHER TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2 UniProtKB/TrEMBL
  TRANSFORMING ACIDIC COILED-COIL PROTEIN, ISOFORM K UniProtKB/TrEMBL
Pfam TACC_C UniProtKB/TrEMBL
UniProt G5BCI8 ENTREZGENE, UniProtKB/TrEMBL