Otud7a (OTU deubiquitinase 7A) - Rat Genome Database

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Gene: Otud7a (OTU deubiquitinase 7A) Heterocephalus glaber
Analyze
Symbol: Otud7a
Name: OTU deubiquitinase 7A
RGD ID: 18901697
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 15q11.2 deletion syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OTU domain containing 7A; OTU domain-containing protein 7A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,348,377 - 1,482,158 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247681,326,417 - 1,482,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Otud7a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247681,348,377 - 1,482,158 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247681,326,417 - 1,482,474 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OTUD7A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381531,475,398 - 31,870,673 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1531,475,398 - 31,870,789 (-)EnsemblGRCh38hg38GRCh38
GRCh371531,767,601 - 32,162,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361529,562,621 - 29,734,834 (-)NCBINCBI36Build 36hg18NCBI36
Build 341529,562,620 - 29,734,834NCBI
Celera159,500,530 - 9,586,701 (-)NCBICelera
Cytogenetic Map15q13.3NCBI
HuRef158,953,038 - 9,124,721 (-)NCBIHuRef
CHM1_11531,766,251 - 31,937,781 (-)NCBICHM1_1
T2T-CHM13v2.01529,269,748 - 29,664,824 (-)NCBIT2T-CHM13v2.0
Otud7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39763,094,493 - 63,415,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl763,094,499 - 63,408,776 (+)EnsemblGRCm39 Ensembl
GRCm38763,444,745 - 63,766,232 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl763,444,751 - 63,759,028 (+)EnsemblGRCm38mm10GRCm38
MGSCv37770,589,658 - 70,903,913 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36763,323,722 - 63,637,977 (+)NCBIMGSCv36mm8
Celera760,886,403 - 61,203,588 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map734.52NCBI
Otud7a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81126,476,275 - 126,800,037 (+)NCBIGRCr8
mRatBN7.21117,064,428 - 117,388,217 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,064,496 - 117,386,480 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01124,311,873 - 124,655,437 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,625,985 - 124,653,820 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01125,428,504 - 125,767,785 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41118,142,100 - 118,247,638 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1109,322,110 - 109,647,375 (+)NCBICelera
Cytogenetic Map1q22NCBI
Otud7a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541630,244,875 - 30,427,829 (-)NCBIChiLan1.0ChiLan1.0
OTUD7A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21620,288,790 - 20,677,159 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11525,006,920 - 25,401,235 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0159,974,737 - 10,360,991 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11529,014,295 - 29,217,332 (-)NCBIpanpan1.1PanPan1.1panPan2
OTUD7A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1337,348,167 - 37,548,357 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl337,348,170 - 37,548,885 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha339,829,134 - 40,221,120 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0337,535,390 - 37,922,120 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl337,535,447 - 37,921,786 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1337,068,759 - 37,455,071 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0337,323,919 - 37,708,706 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0337,531,469 - 37,918,419 (+)NCBIUU_Cfam_GSD_1.0
Otud7a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640145,895,615 - 146,220,872 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936483302,953 - 430,825 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936483113,611 - 432,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OTUD7A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1143,280,174 - 143,419,237 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11143,109,177 - 143,426,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21159,252,983 - 159,368,473 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OTUD7A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12650,842,957 - 51,213,515 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604889,610,045 - 89,983,865 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000011286   ⟹   ENSHGLP00000011162
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247681,348,377 - 1,482,158 (+)Ensembl
RefSeq Acc Id: XM_021264727   ⟹   XP_021120386
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,328,024 - 1,482,474 (+)NCBI
RefSeq Acc Id: XM_021264728   ⟹   XP_021120387
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,328,024 - 1,482,474 (+)NCBI
RefSeq Acc Id: XM_021264729   ⟹   XP_021120388
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,328,024 - 1,482,474 (+)NCBI
RefSeq Acc Id: XM_021264730   ⟹   XP_021120389
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,326,417 - 1,482,474 (+)NCBI
RefSeq Acc Id: XM_021264731   ⟹   XP_021120390
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247681,348,373 - 1,482,474 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021120386 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120387 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120388 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120389 (Get FASTA)   NCBI Sequence Viewer  
  XP_021120390 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011162
Reference Protein Sequences
RefSeq Acc Id: XP_021120389   ⟸   XM_021264730
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021120387   ⟸   XM_021264728
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021120386   ⟸   XM_021264727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021120388   ⟸   XM_021264729
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021120390   ⟸   XM_021264731
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000011162   ⟸   ENSHGLT00000011286


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008007 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000011286 ENTREZGENE
NCBI Gene Otud7a ENTREZGENE