Tmsb10 (thymosin beta 10) - Rat Genome Database

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Gene: Tmsb10 (thymosin beta 10) Heterocephalus glaber
Analyze
Symbol: Tmsb10
Name: thymosin beta 10
RGD ID: 18901696
Description: ENCODES a protein that exhibits actin binding (inferred); actin monomer binding (inferred); INVOLVED IN actin filament organization (inferred); regulation of cell migration (inferred); sequestering of actin monomers (inferred); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Thymosin beta-10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474918,147,637 - 18,148,862 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474918,147,755 - 18,148,834 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytoskeleton  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:26763976   PMID:30032202  


Genomics

Comparative Map Data
Tmsb10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474918,147,637 - 18,148,862 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474918,147,755 - 18,148,834 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMSB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38284,905,656 - 84,906,671 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl284,905,656 - 84,906,671 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,132,780 - 85,133,795 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36284,986,274 - 84,987,310 (+)NCBINCBI36Build 36hg18NCBI36
Build 34285,044,455 - 85,045,451NCBI
Celera284,961,655 - 84,962,691 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,028,869 - 85,029,905 (+)NCBIHuRef
CHM1_1285,062,530 - 85,063,566 (+)NCBICHM1_1
T2T-CHM13v2.0284,907,481 - 84,908,496 (+)NCBIT2T-CHM13v2.0
Tmsb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,934,330 - 72,935,731 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,934,330 - 72,935,731 (-)EnsemblGRCm39 Ensembl
GRCm38672,957,347 - 72,958,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,957,347 - 72,958,748 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,907,341 - 72,908,742 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,886,862 - 72,887,908 (-)NCBIMGSCv36mm8
Celera675,027,991 - 75,029,392 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.35NCBI
Tmsb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84106,568,080 - 106,569,210 (-)NCBIGRCr8
mRatBN7.24105,009,959 - 105,011,095 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4105,009,212 - 105,011,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4110,388,599 - 110,389,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04106,163,692 - 106,164,751 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,777,701 - 104,778,760 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,882,216 - 100,883,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,882,216 - 100,883,275 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04165,645,783 - 165,646,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44106,286,030 - 106,287,089 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14106,530,516 - 106,531,333 (-)NCBI
Celera494,160,243 - 94,161,302 (-)NCBICelera
Cytogenetic Map4q32NCBI
Tmsb10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554242,472,105 - 2,472,499 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554242,471,845 - 2,472,515 (-)NCBIChiLan1.0ChiLan1.0
TMSB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21241,471,922 - 41,473,067 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A41,474,685 - 41,475,792 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A84,958,267 - 84,959,382 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A86,517,393 - 86,518,050 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A86,517,393 - 86,517,799 (+)Ensemblpanpan1.1panPan2
TMSB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11740,048,823 - 40,049,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1740,048,828 - 40,049,470 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1739,720,786 - 39,721,823 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01740,855,767 - 40,856,804 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11739,925,338 - 39,926,377 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,995,532 - 39,996,570 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01740,394,893 - 40,395,926 (-)NCBIUU_Cfam_GSD_1.0
Tmsb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024406292494,766 - 495,872 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366503,686,995 - 3,688,047 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMSB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,776,236 - 59,777,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1359,776,236 - 59,777,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,820,778 - 62,821,794 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMSB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11422,273,951 - 22,274,995 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604590,176,428 - 90,177,505 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023513   ⟹   ENSHGLP00000023297
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474918,147,637 - 18,148,862 (-)Ensembl
RefSeq Acc Id: XM_004844627   ⟹   XP_004844684
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474918,147,755 - 18,148,834 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004844684 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AIZ09073 (Get FASTA)   NCBI Sequence Viewer  
  EHB11964 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023297
Reference Protein Sequences
RefSeq Acc Id: XP_004844684   ⟸   XM_004844627
- UniProtKB: G5BRQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023297   ⟸   ENSHGLT00000023513


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016606 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000023513 ENTREZGENE
Gene3D-CATH 1.20.5.520 UniProtKB/TrEMBL
InterPro Beta-thymosin UniProtKB/TrEMBL
  Beta-thymosin_sf UniProtKB/TrEMBL
KEGG Report hgl:101710411 UniProtKB/TrEMBL
NCBI Gene Tmsb10 ENTREZGENE
PANTHER PTHR12021 UniProtKB/TrEMBL
  THYMOSIN BETA-10 UniProtKB/TrEMBL
Pfam Thymosin UniProtKB/TrEMBL
PIRSF Thymosin_beta UniProtKB/TrEMBL
PROSITE THYMOSIN_B4 UniProtKB/TrEMBL
SMART THY UniProtKB/TrEMBL
UniProt G5BRQ3 ENTREZGENE, UniProtKB/TrEMBL