Dcstamp (dendrocyte expressed seven transmembrane protein) - Rat Genome Database

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Gene: Dcstamp (dendrocyte expressed seven transmembrane protein) Heterocephalus glaber
Analyze
Symbol: Dcstamp
Name: dendrocyte expressed seven transmembrane protein
RGD ID: 18901576
Description: INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); mononuclear cell differentiation (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Cohen syndrome (ortholog); endometriosis (ortholog); FOUND IN cell surface (inferred); endoplasmic reticulum membrane (inferred); endosome membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dendritic cell-specific transmembrane protein; Transmembrane 7 superfamily member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476320,589,668 - 20,601,641 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Dcstamp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476320,589,668 - 20,601,641 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DCSTAMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388104,339,796 - 104,356,689 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8104,339,087 - 104,356,689 (+)EnsemblGRCh38hg38GRCh38
GRCh378105,352,024 - 105,368,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368105,421,230 - 105,438,092 (+)NCBINCBI36Build 36hg18NCBI36
Build 348105,421,229 - 105,438,092NCBI
Celera8101,538,720 - 101,555,582 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef8100,553,073 - 100,569,966 (+)NCBIHuRef
CHM1_18105,392,829 - 105,409,722 (+)NCBICHM1_1
T2T-CHM13v2.08105,466,609 - 105,484,210 (+)NCBIT2T-CHM13v2.0
Dcstamp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391539,609,326 - 39,624,334 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1539,609,326 - 39,624,334 (+)EnsemblGRCm39 Ensembl
GRCm381539,745,930 - 39,760,938 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1539,745,930 - 39,760,938 (+)EnsemblGRCm38mm10GRCm38
MGSCv371539,577,478 - 39,592,480 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361539,576,006 - 39,591,008 (+)NCBIMGSCv36mm8
Celera1540,229,920 - 40,244,989 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.51NCBI
Dcstamp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8772,692,364 - 72,706,983 (+)NCBIGRCr8
mRatBN7.2770,807,455 - 70,822,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl770,807,581 - 70,822,078 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0778,725,173 - 78,756,160 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl778,649,875 - 78,650,906 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl778,732,904 - 78,741,588 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0777,597,411 - 77,598,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4775,318,788 - 75,336,382 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1775,349,840 - 75,357,112 (+)NCBI
Celera767,860,809 - 67,891,645 (+)NCBICelera
Cytogenetic Map7q31NCBI
Dcstamp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541728,155,842 - 28,168,049 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541728,156,046 - 28,169,481 (+)NCBIChiLan1.0ChiLan1.0
DCSTAMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27121,690,535 - 121,709,115 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1897,223,284 - 97,231,562 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08100,967,757 - 100,985,384 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18103,121,332 - 103,138,223 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8103,121,332 - 103,138,223 (+)Ensemblpanpan1.1panPan2
DCSTAMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,542,474 - 5,559,433 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl135,542,425 - 5,571,968 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha135,550,114 - 5,580,387 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,789,666 - 5,820,024 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,789,570 - 5,806,821 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,558,282 - 5,588,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,677,761 - 5,708,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,699,620 - 5,729,895 (+)NCBIUU_Cfam_GSD_1.0
Dcstamp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530332,237,463 - 32,245,440 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647039,664,511 - 39,671,532 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647039,664,573 - 39,671,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCSTAMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl432,913,152 - 32,928,235 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1432,912,320 - 32,928,323 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2435,670,769 - 35,685,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCSTAMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1899,174,778 - 99,193,539 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl899,185,423 - 99,193,058 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603941,377,453 - 41,386,732 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015120   ⟹   ENSHGLP00000014970
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476320,589,668 - 20,601,641 (+)Ensembl
RefSeq Acc Id: XM_013074162   ⟹   XP_012929616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
RefSeq Acc Id: XM_013074163   ⟹   XP_012929617
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
RefSeq Acc Id: XM_013074164   ⟹   XP_012929618
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
RefSeq Acc Id: XM_013074165   ⟹   XP_012929619
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
RefSeq Acc Id: XM_021262797   ⟹   XP_021118456
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
RefSeq Acc Id: XM_021262798   ⟹   XP_021118457
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476320,588,635 - 20,602,124 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_012929618   ⟸   XM_013074164
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118456   ⟸   XM_021262797
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929617   ⟸   XM_013074163
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929616   ⟸   XM_013074162
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118457   ⟸   XM_021262798
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012929619   ⟸   XM_013074165
- UniProtKB: A0A0P6JBV6 (UniProtKB/TrEMBL),   G5AZ87 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000014970   ⟸   ENSHGLT00000015120


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010711 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015120 ENTREZGENE
InterPro DC_STAMP-like UniProtKB/TrEMBL
KEGG Report hgl:101698860 UniProtKB/TrEMBL
NCBI Gene Dcstamp ENTREZGENE
PANTHER DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
  DENDRITIC CELL-SPECIFIC TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
Pfam DC_STAMP UniProtKB/TrEMBL
UniProt A0A0P6JBV6 ENTREZGENE, UniProtKB/TrEMBL
  G5AZ87 ENTREZGENE, UniProtKB/TrEMBL