Nup160 (nucleoporin 160) - Rat Genome Database

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Gene: Nup160 (nucleoporin 160) Heterocephalus glaber
Analyze
Symbol: Nup160
Name: nucleoporin 160
RGD ID: 18901544
Description: ENCODES a protein that exhibits structural constituent of nuclear pore (inferred); INVOLVED IN mRNA export from nucleus (ortholog); nephron development (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN kinetochore (ortholog); nuclear envelope (ortholog); nuclear pore outer ring (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup160
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,099,760 - 1,141,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,099,824 - 1,139,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nup160
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,099,760 - 1,141,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,099,824 - 1,139,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NUP160
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,778,118 - 47,848,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,778,087 - 47,848,555 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,799,670 - 47,870,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,756,246 - 47,826,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,756,245 - 47,826,633NCBI
Celera1147,947,516 - 48,018,167 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,505,182 - 47,575,824 (-)NCBIHuRef
CHM1_11147,798,918 - 47,869,361 (-)NCBICHM1_1
T2T-CHM13v2.01147,943,085 - 48,013,487 (-)NCBIT2T-CHM13v2.0
Nup160
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,504,405 - 90,570,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,507,559 - 90,566,672 (+)EnsemblGRCm39 Ensembl
GRCm38290,677,215 - 90,739,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,677,215 - 90,736,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,517,372 - 90,576,485 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,478,054 - 90,537,167 (+)NCBIMGSCv36mm8
Celera292,062,066 - 92,121,100 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.32NCBI
Nup160
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,120,723 - 97,183,227 (+)NCBIGRCr8
mRatBN7.2376,665,786 - 76,729,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,665,786 - 76,724,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,143,146 - 80,201,929 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,741,649 - 88,800,430 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,592,941 - 86,652,026 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,496,239 - 79,562,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,498,179 - 79,551,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,204,592 - 86,269,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,041,873 - 75,102,540 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,970,326 - 74,998,135 (+)NCBI
Celera375,875,233 - 75,933,741 (+)NCBICelera
Cytogenetic Map3q24NCBI
Nup160
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422561,339 - 599,575 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422561,339 - 598,598 (+)NCBIChiLan1.0ChiLan1.0
NUP160
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,987,480 - 50,062,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,007,198 - 50,081,343 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,732,678 - 47,805,906 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,281,953 - 48,352,998 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,281,972 - 48,352,998 (-)Ensemblpanpan1.1panPan2
NUP160
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,859,697 - 41,902,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,855,670 - 41,902,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,609,926 - 40,634,280 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,534,197 - 42,558,608 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11842,022,368 - 42,046,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,575,386 - 41,599,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,305,224 - 42,329,648 (+)NCBIUU_Cfam_GSD_1.0
Nup160
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,324,045 - 19,379,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,435,973 - 1,490,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,435,938 - 1,491,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP160
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,840,410 - 14,891,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,840,056 - 14,891,567 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,900,356 - 15,956,637 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP160
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,468,783 - 17,540,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,469,576 - 17,541,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038114,754,777 - 114,826,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000017893   ⟹   ENSHGLP00000017718
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247671,099,760 - 1,141,914 (+)Ensembl
RefSeq Acc Id: XM_004851811   ⟹   XP_004851868
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247671,099,824 - 1,139,179 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004851868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000017718
Reference Protein Sequences
RefSeq Acc Id: XP_004851868   ⟸   XM_004851811
- UniProtKB: G5BPB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000017718   ⟸   ENSHGLT00000017893


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012668 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017893 ENTREZGENE
InterPro Nucleoporin_Nup160 UniProtKB/TrEMBL
NCBI Gene Nup160 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP160 UniProtKB/TrEMBL
  NUCLEAR PORE COMPLEX PROTEIN NUP160 UniProtKB/TrEMBL
Pfam Nup160 UniProtKB/TrEMBL
UniProt G5BPB6 ENTREZGENE, UniProtKB/TrEMBL