Wtip (WT1 interacting protein) - Rat Genome Database

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Gene: Wtip (WT1 interacting protein) Heterocephalus glaber
Analyze
Symbol: Wtip
Name: WT1 interacting protein
RGD ID: 18901537
Description: ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); miRNA-mediated gene silencing by inhibition of translation (ortholog); miRNA-mediated post-transcriptional gene silencing (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN P-body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Wilms tumor 1 interacting protein; Wilms tumor protein 1-interacting protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,722,110 - 8,745,987 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,721,261 - 8,746,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
P-body  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Wtip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,722,110 - 8,745,987 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,721,261 - 8,746,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
WTIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381934,481,758 - 34,512,304 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1934,481,758 - 34,512,304 (+)EnsemblGRCh38hg38GRCh38
GRCh371934,972,663 - 35,003,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361939,664,720 - 39,683,925 (+)NCBINCBI36Build 36hg18NCBI36
Celera1931,685,286 - 31,704,490 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1931,480,315 - 31,499,023 (+)NCBIHuRef
CHM1_11934,974,608 - 34,993,787 (+)NCBICHM1_1
T2T-CHM13v2.01937,026,321 - 37,056,847 (+)NCBIT2T-CHM13v2.0
Wtip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39733,808,966 - 33,832,742 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl733,808,968 - 33,832,693 (-)EnsemblGRCm39 Ensembl
GRCm38734,109,547 - 34,133,268 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,109,543 - 34,133,268 (-)EnsemblGRCm38mm10GRCm38
MGSCv37734,894,566 - 34,918,287 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36733,818,307 - 33,842,028 (-)NCBIMGSCv36mm8
Celera729,256,166 - 29,281,467 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.4NCBI
Wtip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,868,399 - 95,902,117 (-)NCBIGRCr8
mRatBN7.2186,731,214 - 86,764,939 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,731,265 - 86,765,014 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,134,465 - 92,168,159 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,600,638 - 100,634,333 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,892,765 - 93,926,460 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,966,496 - 89,999,892 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,967,031 - 90,000,386 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0191,112,674 - 91,145,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,561,102 - 86,602,429 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,639,221 - 86,674,554 (-)NCBI
Celera181,097,543 - 81,130,405 (-)NCBICelera
Cytogenetic Map1q21NCBI
Wtip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,082,681 - 4,106,265 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,082,681 - 4,106,265 (+)NCBIChiLan1.0ChiLan1.0
WTIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22040,484,265 - 40,516,647 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11942,485,746 - 42,513,892 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01931,436,223 - 31,461,262 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,163,731 - 40,182,631 (+)NCBIpanpan1.1PanPan1.1panPan2
WTIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,802,933 - 117,835,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1117,216,227 - 117,235,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,413,952 - 118,433,676 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,413,962 - 118,433,676 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,975,223 - 117,994,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,601,815 - 117,620,691 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,658,727 - 118,678,498 (-)NCBIUU_Cfam_GSD_1.0
Wtip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,150,216 - 10,176,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,470,368 - 1,494,580 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,469,181 - 1,494,574 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WTIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,150,753 - 44,178,373 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,150,875 - 44,178,378 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WTIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1629,534,186 - 29,554,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl629,534,772 - 29,552,887 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,304,680 - 7,325,686 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026447   ⟹   ENSHGLP00000026214
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247948,722,110 - 8,745,987 (-)Ensembl
RefSeq Acc Id: XM_004859155   ⟹   XP_004859212
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247948,721,261 - 8,746,923 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859212 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004859212   ⟸   XM_004859155
RefSeq Acc Id: ENSHGLP00000026214   ⟸   ENSHGLT00000026447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018655 Ensembl
NCBI Gene Wtip ENTREZGENE