Stxbp5 (syntaxin binding protein 5) - Rat Genome Database

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Gene: Stxbp5 (syntaxin binding protein 5) Heterocephalus glaber
Analyze
Symbol: Stxbp5
Name: syntaxin binding protein 5
RGD ID: 18901398
Description: ENCODES a protein that exhibits syntaxin-1 binding (ortholog); INVOLVED IN exocytosis (ortholog); positive regulation of exocytosis (ortholog); regulation of exocytosis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); FOUND IN acetylcholine-gated channel complex (ortholog); cytosol (ortholog); extrinsic component of neuronal dense core vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Syntaxin-binding protein 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478510,692,257 - 10,874,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478510,692,573 - 10,874,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Stxbp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478510,692,257 - 10,874,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478510,692,573 - 10,874,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STXBP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386147,204,417 - 147,390,473 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6147,204,180 - 147,391,010 (+)EnsemblGRCh38hg38GRCh38
GRCh376147,525,553 - 147,711,609 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366147,566,565 - 147,748,588 (+)NCBINCBI36Build 36hg18NCBI36
Build 346147,566,567 - 147,748,584NCBI
Celera6148,265,949 - 148,449,151 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6145,089,042 - 145,275,226 (+)NCBIHuRef
CHM1_16147,788,922 - 147,975,011 (+)NCBICHM1_1
T2T-CHM13v2.06148,397,706 - 148,583,768 (+)NCBIT2T-CHM13v2.0
Stxbp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39109,631,285 - 9,776,987 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl109,631,291 - 9,776,823 (-)EnsemblGRCm39 Ensembl
GRCm38109,755,547 - 9,901,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl109,755,547 - 9,901,079 (-)EnsemblGRCm38mm10GRCm38
MGSCv37109,475,345 - 9,620,838 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36109,445,737 - 9,590,873 (-)NCBIMGSCv36mm8
Celera109,659,963 - 9,805,506 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.21NCBI
Stxbp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,002,738 - 6,155,528 (-)NCBIGRCr8
mRatBN7.214,182,489 - 4,335,290 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14,185,529 - 4,335,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13,859,705 - 4,009,270 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.019,860,141 - 10,009,704 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014,141,857 - 4,291,422 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013,858,917 - 4,011,684 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13,858,909 - 4,011,511 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015,532,156 - 5,682,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414,428,182 - 4,579,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114,428,181 - 4,579,373 (-)NCBI
Celera12,725,757 - 2,875,514 (-)NCBICelera
Cytogenetic Map1p13NCBI
Stxbp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543913,580,113 - 13,743,430 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543913,580,106 - 13,743,430 (-)NCBIChiLan1.0ChiLan1.0
STXBP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25167,213,043 - 167,398,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16165,106,847 - 165,292,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06145,006,696 - 145,192,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16149,719,064 - 149,905,007 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6149,719,064 - 149,902,662 (+)Ensemblpanpan1.1panPan2
STXBP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1138,271,238 - 38,439,088 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl138,271,154 - 38,434,042 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha139,170,639 - 39,338,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0138,443,072 - 38,612,992 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl138,443,201 - 38,605,356 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1138,320,755 - 38,488,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0138,190,698 - 38,358,426 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0138,529,557 - 38,697,531 (+)NCBIUU_Cfam_GSD_1.0
Stxbp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946133,351,292 - 133,522,798 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936489612,124 - 768,722 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936489449,029 - 771,870 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STXBP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl118,345,363 - 18,513,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1118,343,826 - 18,512,750 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2120,543,226 - 20,705,846 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STXBP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11324,365,022 - 24,559,249 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1324,367,627 - 24,559,269 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040200,313,238 - 200,504,306 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008413   ⟹   ENSHGLP00000008324
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478510,692,257 - 10,874,285 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008414   ⟹   ENSHGLP00000008325
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478510,692,257 - 10,874,285 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008415   ⟹   ENSHGLP00000008326
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478510,693,139 - 10,874,040 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008416   ⟹   ENSHGLP00000008327
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478510,693,139 - 10,874,040 (-)Ensembl
RefSeq Acc Id: XM_004856906   ⟹   XP_004856963
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478510,692,573 - 10,874,357 (-)NCBI
RefSeq Acc Id: XM_004856907   ⟹   XP_004856964
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478510,692,573 - 10,874,357 (-)NCBI
RefSeq Acc Id: XM_021238005   ⟹   XP_021093664
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478510,692,573 - 10,874,357 (-)NCBI
RefSeq Acc Id: XM_021238006   ⟹   XP_021093665
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478510,692,573 - 10,874,358 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856963 (Get FASTA)   NCBI Sequence Viewer  
  XP_004856964 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093664 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093665 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA98544 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008324
  ENSHGLP00000008325
Reference Protein Sequences
RefSeq Acc Id: XP_021093665   ⟸   XM_021238006
- Peptide Label: isoform X4
- UniProtKB: G5AND4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856964   ⟸   XM_004856907
- Peptide Label: isoform X3
- UniProtKB: G5AND4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093664   ⟸   XM_021238005
- Peptide Label: isoform X2
- UniProtKB: G5AND4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004856963   ⟸   XM_004856906
- Peptide Label: isoform X1
- UniProtKB: G5AND4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008324   ⟸   ENSHGLT00000008413
RefSeq Acc Id: ENSHGLP00000008325   ⟸   ENSHGLT00000008414
RefSeq Acc Id: ENSHGLP00000008327   ⟸   ENSHGLT00000008416
RefSeq Acc Id: ENSHGLP00000008326   ⟸   ENSHGLT00000008415


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006026 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008413 ENTREZGENE
  ENSHGLT00000008414 ENTREZGENE
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  YVTN repeat-like/Quinoprotein amine dehydrogenase UniProtKB/TrEMBL
InterPro Lethal2_giant UniProtKB/TrEMBL
  Lgl_C_dom UniProtKB/TrEMBL
  LLGL2 UniProtKB/TrEMBL
  V_SNARE_CC UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Stxbp5 ENTREZGENE
PANTHER LETHAL 2 GIANT LARVAE PROTEIN UniProtKB/TrEMBL
  SYNTAXIN-BINDING PROTEIN 5 UniProtKB/TrEMBL
Pfam Lgl_C UniProtKB/TrEMBL
  LLGL UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS LETHAL2GIANT UniProtKB/TrEMBL
PROSITE V_SNARE UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
  WD40 repeat-like UniProtKB/TrEMBL
UniProt G5AND4 ENTREZGENE, UniProtKB/TrEMBL