Filip1 (filamin A interacting protein 1) - Rat Genome Database

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Gene: Filip1 (filamin A interacting protein 1) Heterocephalus glaber
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Symbol: Filip1
Name: filamin A interacting protein 1
RGD ID: 18901389
Description: INVOLVED IN cerebral cortex development (ortholog); corpus callosum development (ortholog); modification of postsynaptic structure (ortholog); ASSOCIATED WITH NEUROMUSCULAR DISORDER, CONGENITAL, WITH DYSMORPHIC FACIES (ortholog); Osteoarthritis, Hip (ortholog); Stomach Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); glutamatergic synapse (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Filamin-A-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,380,195 - 2,501,975 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,352,322 - 2,562,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Filip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248192,380,195 - 2,501,975 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248192,352,322 - 2,562,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FILIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38675,291,859 - 75,493,800 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl675,291,859 - 75,493,800 (-)EnsemblGRCh38hg38GRCh38
GRCh37676,001,575 - 76,203,516 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36676,074,520 - 76,260,216 (-)NCBINCBI36Build 36hg18NCBI36
Celera676,411,158 - 76,596,783 (-)NCBICelera
Cytogenetic Map6q14.1NCBI
HuRef673,216,562 - 73,402,078 (-)NCBIHuRef
CHM1_1676,183,855 - 76,369,757 (-)NCBICHM1_1
T2T-CHM13v2.0676,468,681 - 76,670,584 (-)NCBIT2T-CHM13v2.0
Filip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39979,708,461 - 79,920,135 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl979,712,376 - 79,920,133 (-)EnsemblGRCm39 Ensembl
GRCm38979,805,018 - 80,012,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl979,805,094 - 80,012,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37979,663,369 - 79,825,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36979,601,246 - 79,763,566 (-)NCBIMGSCv36mm8
Celera976,961,597 - 77,115,767 (-)NCBICelera
Cytogenetic Map9E1NCBI
cM Map943.83NCBI
Filip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8889,641,509 - 89,836,772 (-)NCBIGRCr8
mRatBN7.2880,761,283 - 80,956,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl880,764,604 - 80,922,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx886,301,943 - 86,448,554 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0884,579,095 - 84,725,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0882,401,723 - 82,548,331 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0887,257,312 - 87,453,432 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl887,256,264 - 87,419,564 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0886,801,356 - 86,958,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4884,873,131 - 84,902,873 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1884,892,590 - 84,922,320 (-)NCBI
Celera880,499,964 - 80,646,261 (-)NCBICelera
Cytogenetic Map8q31NCBI
Filip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555023,823,872 - 3,903,481 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555023,806,016 - 3,976,013 (-)NCBIChiLan1.0ChiLan1.0
FILIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2595,338,362 - 95,538,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1693,215,900 - 93,416,421 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0673,135,086 - 73,334,630 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1676,426,161 - 76,625,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl676,429,175 - 76,548,549 (-)Ensemblpanpan1.1panPan2
FILIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11236,939,378 - 37,146,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1236,942,790 - 37,166,589 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1236,819,013 - 37,025,711 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01237,643,816 - 37,668,087 (-)NCBIROS_Cfam_1.0
Filip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494672,355,184 - 72,518,640 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936788750,934 - 900,714 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936788737,375 - 900,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl190,427,659 - 90,638,550 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1190,427,529 - 90,643,061 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21101,576,029 - 101,635,660 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1136,620 - 315,021 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl133,419 - 237,925 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040176,305,116 - 176,541,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001987   ⟹   ENSHGLP00000001941
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248192,380,195 - 2,501,975 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000001988   ⟹   ENSHGLP00000001942
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248192,380,733 - 2,475,150 (-)Ensembl
RefSeq Acc Id: XM_021243752   ⟹   XP_021099411
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248192,352,322 - 2,562,060 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021099411 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97762 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000001942
RefSeq Acc Id: XP_021099411   ⟸   XM_021243752
Ensembl Acc Id: ENSHGLP00000001941   ⟸   ENSHGLT00000001987
Ensembl Acc Id: ENSHGLP00000001942   ⟸   ENSHGLT00000001988


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001478 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001988 ENTREZGENE
NCBI Gene Filip1 ENTREZGENE
UniProt A0AAX6RS88_HETGA UniProtKB/TrEMBL