LOC101710326 (surfeit locus protein 1) - Rat Genome Database

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Gene: LOC101710326 (surfeit locus protein 1) Heterocephalus glaber
Analyze
Symbol: LOC101710326 (Ensembl: SURF1)
Name: surfeit locus protein 1
RGD ID: 18901284
Description: ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); INVOLVED IN Golgi organization (inferred); mitochondrial cytochrome c oxidase assembly (inferred); ASSOCIATED WITH cerebellar ataxia (ortholog); Charcot-Marie-Tooth disease type 4K (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Surf1; surfeit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,815,224 - 1,818,991 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,815,215 - 1,819,014 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101710326
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,815,224 - 1,818,991 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,815,215 - 1,819,014 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SURF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,351,758 - 133,356,487 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,351,758 - 133,356,676 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,218,613 - 136,223,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,208,487 - 135,213,182 (-)NCBINCBI36Build 36hg18NCBI36
Build 349133,248,219 - 133,252,915NCBI
Celera9106,769,152 - 106,773,840 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,718,581 - 105,723,261 (-)NCBIHuRef
CHM1_19136,368,824 - 136,373,504 (-)NCBICHM1_1
T2T-CHM13v2.09145,565,698 - 145,570,441 (-)NCBIT2T-CHM13v2.0
Surf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,803,390 - 26,806,667 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,803,393 - 26,806,542 (-)EnsemblGRCm39 Ensembl
GRCm38226,913,378 - 26,916,610 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,913,381 - 26,916,530 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,768,898 - 26,772,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,735,445 - 26,738,340 (-)NCBIMGSCv36mm8
Celera226,623,123 - 26,626,275 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.1NCBI
Surf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,639,868 - 30,642,759 (-)NCBIGRCr8
mRatBN7.2310,241,793 - 10,244,686 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,241,837 - 10,263,315 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,301,794 - 13,304,626 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,887,195 - 21,890,027 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,142,496 - 20,145,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,461,717 - 5,464,560 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,869,795 - 4,872,632 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0310,823,627 - 10,826,484 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,810,638 - 5,813,475 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.135,810,937 - 5,813,775 (-)NCBI
Celera35,039,828 - 5,042,665 (-)NCBICelera
Cytogenetic Map3p13NCBI
Surf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555132,707,951 - 2,711,566 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555132,707,877 - 2,711,606 (-)NCBIChiLan1.0ChiLan1.0
LOC100983451
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,996,845 - 6,001,561 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,999,191 - 6,003,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,475,018 - 104,479,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,085,739 - 133,088,911 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,085,739 - 133,088,904 (-)Ensemblpanpan1.1panPan2
SURF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,786,562 - 49,790,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,786,085 - 49,790,148 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,066,928 - 49,071,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,659,471 - 50,664,036 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,660,593 - 50,664,180 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,421,907 - 49,426,471 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,763,390 - 49,767,971 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,841,389 - 49,845,964 (-)NCBIUU_Cfam_GSD_1.0
LOC101971854
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947199,842,971 - 199,847,440 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,527,761 - 3,534,586 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366693,527,741 - 3,532,087 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SURF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1272,965,643 - 272,970,483 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11272,965,637 - 272,970,516 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103239687
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,780,415 - 4,785,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,780,568 - 4,785,385 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666058203,090 - 208,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000020743   ⟹   ENSHGLP00000020541
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247601,815,224 - 1,818,991 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000020744   ⟹   ENSHGLP00000020542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247601,815,272 - 1,818,968 (-)Ensembl
RefSeq Acc Id: XM_004848950   ⟹   XP_004849007
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,815,215 - 1,819,012 (-)NCBI
RefSeq Acc Id: XM_004848951   ⟹   XP_004849008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,815,215 - 1,819,014 (-)NCBI
RefSeq Acc Id: XM_021261737   ⟹   XP_021117396
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247601,815,215 - 1,819,013 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004849007 (Get FASTA)   NCBI Sequence Viewer  
  XP_004849008 (Get FASTA)   NCBI Sequence Viewer  
  XP_021117396 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05582 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020541
  ENSHGLP00000020542
GenBank Protein JAO02388 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004849008   ⟸   XM_004848951
- Peptide Label: isoform X2
- UniProtKB: G5B8H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021117396   ⟸   XM_021261737
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004849007   ⟸   XM_004848950
- Peptide Label: isoform X1
RefSeq Acc Id: ENSHGLP00000020541   ⟸   ENSHGLT00000020743
RefSeq Acc Id: ENSHGLP00000020542   ⟸   ENSHGLT00000020744


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014684 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000020743 ENTREZGENE
  ENSHGLT00000020744 ENTREZGENE
InterPro Surf1/Shy1 UniProtKB/TrEMBL
  Surf1/Surf4 UniProtKB/TrEMBL
NCBI Gene LOC101710326 ENTREZGENE
PANTHER PTHR23427 UniProtKB/TrEMBL
  SURFEIT LOCUS PROTEIN 1 UniProtKB/TrEMBL
Pfam SURF1 UniProtKB/TrEMBL
PROSITE SURF1 UniProtKB/TrEMBL
UniProt G5B8H1 ENTREZGENE, UniProtKB/TrEMBL