Tmem171 (transmembrane protein 171) - Rat Genome Database

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Gene: Tmem171 (transmembrane protein 171) Heterocephalus glaber
Analyze
Symbol: Tmem171
Name: transmembrane protein 171
RGD ID: 18901130
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249052,167,045 - 2,177,234 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249052,167,147 - 2,176,964 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Tmem171
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249052,167,045 - 2,177,234 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249052,167,147 - 2,176,964 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TMEM171
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38573,120,575 - 73,131,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl573,120,569 - 73,131,809 (+)EnsemblGRCh38hg38GRCh38
GRCh37572,416,402 - 72,427,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,452,158 - 72,463,397 (+)NCBINCBI36Build 36hg18NCBI36
Celera568,311,763 - 68,323,014 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef567,622,070 - 67,633,327 (+)NCBIHuRef
CHM1_1571,849,116 - 71,860,378 (+)NCBICHM1_1
T2T-CHM13v2.0573,601,908 - 73,613,146 (+)NCBIT2T-CHM13v2.0
Tmem171
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,822,744 - 98,832,142 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,822,743 - 98,831,342 (-)EnsemblGRCm39 Ensembl
GRCm381398,686,236 - 98,695,654 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,686,235 - 98,694,834 (-)EnsemblGRCm38mm10GRCm38
MGSCv371399,456,193 - 99,464,786 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361399,786,395 - 99,794,988 (-)NCBIMGSCv36mm8
Celera13102,345,922 - 102,354,526 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.13NCBI
Tmem171
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,769,486 - 31,779,358 (-)NCBIGRCr8
mRatBN7.2230,035,278 - 30,045,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,035,278 - 30,045,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx237,093,085 - 37,106,136 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.022,313,122 - 2,326,173 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,003,666 - 30,013,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,791,831 - 28,802,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,791,875 - 28,801,223 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0247,889,908 - 47,900,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4229,301,092 - 29,310,650 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1229,221,460 - 29,231,019 (-)NCBI
Celera226,071,073 - 26,080,320 (-)NCBICelera
Cytogenetic Map2q12NCBI
Tmem171
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542527,457,185 - 27,464,513 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542527,457,245 - 27,466,484 (-)NCBIChiLan1.0ChiLan1.0
TMEM171
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2442,183,385 - 42,194,835 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1540,337,014 - 40,348,485 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0542,181,966 - 42,193,088 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1542,781,305 - 42,789,684 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl542,781,305 - 42,789,684 (-)Ensemblpanpan1.1panPan2
TMEM171
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,036,463 - 56,044,443 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,037,975 - 56,044,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha253,008,185 - 53,018,390 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0256,558,208 - 56,566,307 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,559,817 - 56,566,307 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,617,060 - 53,627,212 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,384,978 - 54,395,341 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,275,830 - 55,286,629 (+)NCBIUU_Cfam_GSD_1.0
Tmem171
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213187,446,269 - 187,455,734 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365493,403,222 - 3,412,348 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365493,403,250 - 3,411,897 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM171
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,287,158 - 82,297,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1282,287,211 - 82,297,855 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2283,995,709 - 84,006,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM171
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,463,098 - 67,476,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl467,462,987 - 67,475,326 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604916,230,129 - 16,241,665 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000000386   ⟹   ENSHGLP00000000352
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249052,167,045 - 2,177,234 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000387   ⟹   ENSHGLP00000000353
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249052,167,912 - 2,177,234 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000000388   ⟹   ENSHGLP00000000354
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249052,169,446 - 2,177,234 (+)Ensembl
RefSeq Acc Id: XM_004872867   ⟹   XP_004872924
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249052,167,626 - 2,176,958 (+)NCBI
RefSeq Acc Id: XM_004872868   ⟹   XP_004872925
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249052,167,619 - 2,176,964 (+)NCBI
RefSeq Acc Id: XM_004872869   ⟹   XP_004872926
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249052,167,147 - 2,176,958 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004872924 (Get FASTA)   NCBI Sequence Viewer  
  XP_004872925 (Get FASTA)   NCBI Sequence Viewer  
  XP_004872926 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03316 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000000352
  ENSHGLP00000000353
GenBank Protein JAN97230 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004872926   ⟸   XM_004872869
- Peptide Label: isoform X3
- UniProtKB: G5B214 (UniProtKB/TrEMBL),   A0A0P6JA34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872925   ⟸   XM_004872868
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JA34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004872924   ⟸   XM_004872867
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JA34 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000000352   ⟸   ENSHGLT00000000386
RefSeq Acc Id: ENSHGLP00000000353   ⟸   ENSHGLT00000000387
RefSeq Acc Id: ENSHGLP00000000354   ⟸   ENSHGLT00000000388


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000000331 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000000386 ENTREZGENE
  ENSHGLT00000000387 ENTREZGENE
InterPro TMEM171 UniProtKB/TrEMBL
NCBI Gene Tmem171 ENTREZGENE
PANTHER PTHR31617 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 171 UniProtKB/TrEMBL
Pfam TMEM171 UniProtKB/TrEMBL
UniProt A0A0P6JA34 ENTREZGENE, UniProtKB/TrEMBL
  G5B214 ENTREZGENE, UniProtKB/TrEMBL