Alkbh2 (alkB homolog 2, alpha-ketoglutarate dependent dioxygenase) - Rat Genome Database

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Gene: Alkbh2 (alkB homolog 2, alpha-ketoglutarate dependent dioxygenase) Heterocephalus glaber
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Symbol: Alkbh2
Name: alkB homolog 2, alpha-ketoglutarate dependent dioxygenase
RGD ID: 18901127
Description: ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); endonuclease activity (ortholog); exonuclease activity (ortholog); INVOLVED IN DNA alkylation repair (inferred); DNA repair (inferred); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alkB, alkylation repair homolog 2; alpha-ketoglutarate-dependent dioxygenase alkB homolog 2; Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2; DNA oxidative demethylase ALKBH2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474712,249,352 - 12,258,384 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474712,249,333 - 12,259,248 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Alkbh2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474712,249,352 - 12,258,384 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474712,249,333 - 12,259,248 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ALKBH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812109,088,189 - 109,093,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12109,088,188 - 109,093,631 (-)EnsemblGRCh38hg38GRCh38
GRCh3712109,525,994 - 109,531,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,010,379 - 108,015,628 (-)NCBINCBI36Build 36hg18NCBI36
Celera12109,149,917 - 109,155,219 (-)NCBICelera
Cytogenetic Map12q24.11NCBI
HuRef12106,544,162 - 106,549,711 (-)NCBIHuRef
CHM1_112109,493,646 - 109,498,943 (-)NCBICHM1_1
T2T-CHM13v2.012109,063,001 - 109,068,284 (-)NCBIT2T-CHM13v2.0
Alkbh2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,261,987 - 114,268,782 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5114,261,987 - 114,266,279 (-)EnsemblGRCm39 Ensembl
GRCm385114,123,926 - 114,131,233 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,123,926 - 114,128,218 (-)EnsemblGRCm38mm10GRCm38
MGSCv375114,573,943 - 114,578,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365114,384,933 - 114,389,175 (-)NCBIMGSCv36mm8
Celera5111,225,796 - 111,230,044 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.97NCBI
Alkbh2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81248,156,825 - 48,161,489 (+)NCBIGRCr8
mRatBN7.21242,494,187 - 42,500,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1242,496,300 - 42,500,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1243,663,490 - 43,668,131 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01244,277,081 - 44,281,722 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01243,337,598 - 43,342,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,257,575 - 48,262,244 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,257,609 - 48,262,243 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01250,039,893 - 50,044,572 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,531,682 - 43,536,317 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11243,392,394 - 43,399,689 (+)NCBI
Celera1244,100,824 - 44,105,459 (+)NCBICelera
Cytogenetic Map12q16NCBI
Alkbh2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,255,292 - 10,265,083 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,258,736 - 10,265,100 (-)NCBIChiLan1.0ChiLan1.0
ALKBH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210117,153,973 - 117,160,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112117,150,371 - 117,156,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012106,664,678 - 106,670,558 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112110,058,507 - 110,068,225 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,058,507 - 110,063,946 (-)Ensemblpanpan1.1panPan2
ALKBH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,911,892 - 17,918,911 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,911,763 - 17,917,788 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,882,716 - 17,889,612 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02618,256,208 - 18,263,098 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2618,257,880 - 18,264,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12618,092,011 - 18,098,900 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02618,246,822 - 18,253,708 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02618,265,421 - 18,272,096 (+)NCBIUU_Cfam_GSD_1.0
Alkbh2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,564,996 - 144,571,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936769904,125 - 906,881 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936769904,129 - 908,130 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,760,505 - 41,766,090 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11441,760,427 - 41,766,990 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,326,105 - 44,331,765 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ALKBH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,292,528 - 104,298,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11104,288,454 - 104,298,196 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037140,805,493 - 140,810,976 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015151   ⟹   ENSHGLP00000015001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474712,249,352 - 12,258,384 (-)Ensembl
RefSeq Acc Id: XM_004843633   ⟹   XP_004843690
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474712,249,333 - 12,259,126 (-)NCBI
RefSeq Acc Id: XM_004843634   ⟹   XP_004843691
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474712,249,333 - 12,259,248 (-)NCBI
RefSeq Acc Id: XM_004843635   ⟹   XP_004843692
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474712,249,333 - 12,259,126 (-)NCBI
RefSeq Acc Id: XM_021257333   ⟹   XP_021112992
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474712,249,333 - 12,259,248 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843690 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843691 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843692 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112992 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01550 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015001
GenBank Protein JAO02292 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112992   ⟸   XM_021257333
- Peptide Label: isoform X2
- UniProtKB: A0AAX6STE6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843691   ⟸   XM_004843634
- Peptide Label: isoform X1
- UniProtKB: G5AWY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843690   ⟸   XM_004843633
- Peptide Label: isoform X1
- UniProtKB: G5AWY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843692   ⟸   XM_004843635
- Peptide Label: isoform X1
- UniProtKB: G5AWY9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015001   ⟸   ENSHGLT00000015151


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010740 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015151 ENTREZGENE
Gene3D-CATH 2.60.120.590 UniProtKB/TrEMBL
InterPro AlkB-like UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/TrEMBL
  ALKBH2 UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
KEGG Report hgl:101716220 UniProtKB/TrEMBL
NCBI Gene Alkbh2 ENTREZGENE
PANTHER DNA OXIDATIVE DEMETHYLASE ALKBH2 UniProtKB/TrEMBL
  PTHR31573 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0AAX6STE6 ENTREZGENE, UniProtKB/TrEMBL
  G5AWY9 ENTREZGENE, UniProtKB/TrEMBL