Hid1 (HID1 domain containing) - Rat Genome Database

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Gene: Hid1 (HID1 domain containing) Heterocephalus glaber
Analyze
Symbol: Hid1
Name: HID1 domain containing
RGD ID: 18900982
Description: ASSOCIATED WITH developmental and epileptic encephalopathy 105 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); cytoplasmic side of Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein HID1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,780,292 - 4,803,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,780,292 - 4,803,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
HID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,950,742 - 74,972,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,950,742 - 74,973,166 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,946,837 - 72,968,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,458,434 - 70,480,411 (-)NCBINCBI36Build 36hg18NCBI36
Build 341770,458,434 - 70,480,411NCBI
Celera1769,540,064 - 69,562,127 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,357,185 - 68,379,242 (-)NCBIHuRef
CHM1_11773,011,663 - 73,033,724 (-)NCBICHM1_1
T2T-CHM13v2.01775,842,545 - 75,864,555 (-)NCBIT2T-CHM13v2.0
Hid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,238,531 - 115,261,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,238,533 - 115,258,582 (-)EnsemblGRCm39 Ensembl
GRCm3811115,347,705 - 115,367,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,347,707 - 115,367,756 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711115,209,023 - 115,229,033 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,163,799 - 115,183,809 (-)NCBIMGSCv36mm8
Celera11127,113,596 - 127,133,644 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.84NCBI
Hid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,088,526 - 101,109,011 (-)NCBIGRCr8
mRatBN7.210100,589,555 - 100,610,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,589,555 - 100,610,041 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,649,686 - 105,670,169 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,112,751 - 105,133,234 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,510,542 - 100,531,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,899,160 - 103,919,649 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,899,150 - 103,919,605 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,372,153 - 104,392,628 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,424,827 - 105,445,183 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,439,342 - 105,459,798 (-)NCBI
Celera1099,164,840 - 99,185,325 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Hid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,818,163 - 1,839,123 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,818,215 - 1,839,123 (-)NCBIChiLan1.0ChiLan1.0
HID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,987,906 - 91,009,918 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,810,899 - 95,832,898 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,896,323 - 68,918,315 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,452,589 - 74,473,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,452,589 - 74,473,805 (-)Ensemblpanpan1.1panPan2
HID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,491,944 - 5,505,096 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,486,318 - 5,504,508 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,164,462 - 6,183,350 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,156,774 - 6,175,663 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,156,724 - 6,175,661 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,193,913 - 6,212,828 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,304,234 - 6,323,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,364,673 - 6,383,600 (+)NCBIUU_Cfam_GSD_1.0
Hid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,109,440 - 6,127,062 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594284,859 - 302,531 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594284,896 - 302,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,291,560 - 6,310,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,291,149 - 6,310,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,275,680 - 6,295,405 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,706,150 - 46,729,651 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,706,158 - 46,729,856 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,492,055 - 17,515,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008998   ⟹   ENSHGLP00000008903
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248014,780,292 - 4,803,724 (-)Ensembl
RefSeq Acc Id: XM_004860623   ⟹   XP_004860680
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBI
RefSeq Acc Id: XM_004860624   ⟹   XP_004860681
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBI
RefSeq Acc Id: XM_013078203   ⟹   XP_012933657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBI
RefSeq Acc Id: XM_021241122   ⟹   XP_021096781
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBI
RefSeq Acc Id: XM_021241123   ⟹   XP_021096782
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248014,783,598 - 4,803,660 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004860680 (Get FASTA)   NCBI Sequence Viewer  
  XP_004860681 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933657 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096781 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096782 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008903
Reference Protein Sequences
RefSeq Acc Id: XP_021096781   ⟸   XM_021241122
- Peptide Label: isoform X2
- UniProtKB: G5BND5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096782   ⟸   XM_021241123
- Peptide Label: isoform X5
- UniProtKB: G5BND5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860681   ⟸   XM_004860624
- Peptide Label: isoform X4
- UniProtKB: G5BND5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933657   ⟸   XM_013078203
- Peptide Label: isoform X3
- UniProtKB: G5BND5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004860680   ⟸   XM_004860623
- Peptide Label: isoform X1
- UniProtKB: G5BND5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008903   ⟸   ENSHGLT00000008998


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006397 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008998 ENTREZGENE
InterPro Hid-1/Ecm30 UniProtKB/TrEMBL
NCBI Gene Hid1 ENTREZGENE
PANTHER PROTEIN HID1 UniProtKB/TrEMBL
  PROTEIN HID1 UniProtKB/TrEMBL
Pfam Hid1 UniProtKB/TrEMBL
UniProt G5BND5 ENTREZGENE, UniProtKB/TrEMBL