Cul5 (cullin 5) - Rat Genome Database

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Gene: Cul5 (cullin 5) Heterocephalus glaber
Analyze
Symbol: Cul5
Name: cullin 5
RGD ID: 18900822
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); protein ubiquitination (ortholog); radial glia guided migration of Purkinje cell (ortholog); PARTICIPATES IN neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH ataxia telangiectasia (ortholog); Brain Injuries (ortholog); Breast Neoplasms (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); site of DNA damage (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cullin-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,736,490 - 2,820,564 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247842,736,462 - 2,822,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cul5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,736,490 - 2,820,564 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247842,736,462 - 2,822,854 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CUL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811108,008,898 - 108,107,761 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11108,008,898 - 108,107,761 (+)EnsemblGRCh38hg38GRCh38
GRCh3711107,879,624 - 107,978,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,384,618 - 107,483,698 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411107,384,854 - 107,482,773NCBI
Celera11105,033,798 - 105,132,859 (+)NCBICelera
Cytogenetic Map11q22.3NCBI
HuRef11103,804,481 - 103,903,597 (+)NCBIHuRef
CHM1_111107,762,661 - 107,861,678 (+)NCBICHM1_1
T2T-CHM13v2.011108,015,935 - 108,114,778 (+)NCBIT2T-CHM13v2.0
Cul5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,525,881 - 53,578,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl953,525,882 - 53,581,314 (-)EnsemblGRCm39 Ensembl
GRCm38953,614,581 - 53,667,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,614,582 - 53,670,014 (-)EnsemblGRCm38mm10GRCm38
MGSCv37953,422,687 - 53,475,612 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36953,379,265 - 53,429,872 (-)NCBIMGSCv36mm8
Celera950,874,391 - 50,927,173 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map929.12NCBI
Cul5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8862,909,150 - 62,974,641 (-)NCBIGRCr8
mRatBN7.2854,012,963 - 54,066,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl854,016,006 - 54,066,666 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx859,541,355 - 59,591,763 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0857,820,377 - 57,870,785 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0855,684,618 - 55,735,030 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0858,199,992 - 58,255,149 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,202,821 - 58,253,688 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0856,782,444 - 56,837,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4857,080,787 - 57,132,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1857,099,840 - 57,151,540 (-)NCBI
Celera853,506,656 - 53,557,091 (-)NCBICelera
Cytogenetic Map8q24NCBI
Cul5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,256,381 - 10,336,156 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,266,072 - 10,336,156 (+)NCBIChiLan1.0ChiLan1.0
CUL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29108,752,165 - 108,852,631 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111109,846,019 - 109,945,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011102,895,611 - 102,994,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111106,371,759 - 106,469,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,371,759 - 106,469,989 (+)Ensemblpanpan1.1panPan2
CUL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,393,692 - 24,477,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,396,823 - 24,488,043 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,319,399 - 24,414,613 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0524,422,828 - 24,518,010 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl524,422,832 - 24,518,012 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1524,470,110 - 24,565,387 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0524,371,684 - 24,467,023 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0524,429,854 - 24,525,492 (-)NCBIUU_Cfam_GSD_1.0
Cul5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,811,798 - 90,894,693 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936551641,463 - 724,711 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936551641,469 - 724,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,419,881 - 36,507,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,419,806 - 36,507,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,496,564 - 40,584,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,432,034 - 99,538,296 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl199,432,706 - 99,534,888 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604326,419,221 - 26,524,597 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008582   ⟹   ENSHGLP00000008492
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247842,736,490 - 2,820,564 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000008583   ⟹   ENSHGLP00000008493
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247842,736,705 - 2,819,256 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000008584   ⟹   ENSHGLP00000008494
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247842,736,705 - 2,819,256 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000008585   ⟹   ENSHGLP00000008495
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247842,756,951 - 2,819,256 (+)Ensembl
RefSeq Acc Id: XM_004856511   ⟹   XP_004856568
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247842,736,462 - 2,822,854 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856568 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008493
Reference Protein Sequences
RefSeq Acc Id: XP_004856568   ⟸   XM_004856511
RefSeq Acc Id: ENSHGLP00000008493   ⟸   ENSHGLT00000008583
RefSeq Acc Id: ENSHGLP00000008492   ⟸   ENSHGLT00000008582
RefSeq Acc Id: ENSHGLP00000008495   ⟸   ENSHGLT00000008585
RefSeq Acc Id: ENSHGLP00000008494   ⟸   ENSHGLT00000008584


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006132 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008583 ENTREZGENE
NCBI Gene Cul5 ENTREZGENE