Cebpe (CCAAT enhancer binding protein epsilon) - Rat Genome Database

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Gene: Cebpe (CCAAT enhancer binding protein epsilon) Heterocephalus glaber
Analyze
Symbol: Cebpe
Name: CCAAT enhancer binding protein epsilon
RGD ID: 18900818
Description: ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); macrophage differentiation (ortholog); myeloid cell differentiation (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute promyelocytic leukemia (ortholog); Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCAAT/enhancer-binding protein epsilon
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,423,725 - 9,425,338 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,423,725 - 9,425,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cebpe
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248209,423,725 - 9,425,338 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248209,423,725 - 9,425,338 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CEBPE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,117,306 - 23,119,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,117,036 - 23,120,256 (-)EnsemblGRCh38hg38GRCh38
GRCh371423,586,515 - 23,588,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,656,355 - 22,658,314 (-)NCBINCBI36Build 36hg18NCBI36
Build 341422,656,354 - 22,658,314NCBI
Celera143,449,221 - 3,451,180 (-)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,703,432 - 3,705,737 (-)NCBIHuRef
CHM1_11423,585,117 - 23,587,422 (-)NCBICHM1_1
T2T-CHM13v2.01417,317,962 - 17,319,911 (-)NCBIT2T-CHM13v2.0
Cebpe
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,947,823 - 54,949,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,947,817 - 54,949,631 (-)EnsemblGRCm39 Ensembl
GRCm381454,710,363 - 54,712,174 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,710,360 - 54,712,174 (-)EnsemblGRCm38mm10GRCm38
MGSCv371455,329,200 - 55,331,011 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361453,664,568 - 53,666,379 (-)NCBIMGSCv36mm8
Celera1452,503,048 - 52,504,856 (-)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.9NCBI
Cebpe
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,139,716 - 32,141,476 (-)NCBIGRCr8
mRatBN7.21528,169,711 - 28,171,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,169,704 - 28,171,814 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1530,008,535 - 30,009,933 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,155,742 - 31,157,140 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,405,499 - 29,406,897 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,356,119 - 33,357,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,355,947 - 33,358,138 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01537,241,081 - 37,242,479 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41532,787,946 - 32,789,344 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11532,803,645 - 32,805,044 (-)NCBI
Celera1527,748,085 - 27,749,483 (-)NCBICelera
Cytogenetic Map15p13NCBI
Cebpe
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,186,039 - 37,187,921 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540937,186,282 - 37,187,914 (+)NCBIChiLan1.0ChiLan1.0
CEBPE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,549,856 - 24,551,768 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,766,345 - 23,768,257 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,937,200 - 3,939,112 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,033,654 - 22,035,598 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,033,654 - 22,035,219 (-)Ensemblpanpan1.1panPan2
CEBPE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,423,046 - 3,425,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,423,040 - 3,425,217 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha83,371,449 - 3,373,753 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.083,530,976 - 3,533,280 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,531,186 - 3,532,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,222,190 - 3,224,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,283,193 - 3,285,499 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,545,688 - 3,547,992 (-)NCBIUU_Cfam_GSD_1.0
Cebpe
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,179,510 - 35,182,588 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,207,743 - 1,209,482 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,207,718 - 1,209,482 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,927,662 - 75,929,769 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1775,926,652 - 75,929,949 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2781,265,729 - 81,267,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,485,966 - 23,488,615 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,486,148 - 23,487,755 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605922,928,015 - 22,931,027 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016392   ⟹   ENSHGLP00000016223
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248209,423,725 - 9,425,338 (+)Ensembl
RefSeq Acc Id: XM_004864180   ⟹   XP_004864237
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248209,423,725 - 9,425,338 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004864237 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB00016 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016223
Reference Protein Sequences
RefSeq Acc Id: XP_004864237   ⟸   XM_004864180
- UniProtKB: G5ASK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016223   ⟸   ENSHGLT00000016392


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011620 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016392 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  C/EBP UniProtKB/TrEMBL
  C/EBP_chordates UniProtKB/TrEMBL
KEGG Report hgl:101718295 UniProtKB/TrEMBL
NCBI Gene Cebpe ENTREZGENE
PANTHER CCAAT/ENHANCER BINDING PROTEIN UniProtKB/TrEMBL
  CCAAT/ENHANCER-BINDING PROTEIN EPSILON UniProtKB/TrEMBL
Pfam bZIP_2 UniProtKB/TrEMBL
PIRSF CCAAT/enhancer-binding UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt G5ASK5 ENTREZGENE, UniProtKB/TrEMBL