Pip4p2 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2) - Rat Genome Database

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Gene: Pip4p2 (phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2) Heterocephalus glaber
Analyze
Symbol: Pip4p2
Name: phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
RGD ID: 18900803
Description: ENCODES a protein that exhibits hydrolase activity (inferred); phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (inferred); INVOLVED IN negative regulation of phagocytosis (inferred); phosphatidylinositol dephosphorylation (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN endosome (inferred); endosome membrane (inferred); late endosome membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Tmem55a; transmembrane protein 55A; type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624744924,211 - 978,625 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pip4p2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624744924,211 - 978,625 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
PIP4P2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38890,993,802 - 91,040,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl890,993,802 - 91,040,872 (-)EnsemblGRCh38hg38GRCh38
GRCh37892,006,030 - 92,053,087 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36892,075,675 - 92,122,227 (-)NCBINCBI36Build 36hg18NCBI36
Celera888,201,253 - 88,248,229 (-)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef887,216,426 - 87,263,709 (-)NCBIHuRef
CHM1_1892,047,148 - 92,093,868 (-)NCBICHM1_1
T2T-CHM13v2.0892,118,724 - 92,165,782 (-)NCBIT2T-CHM13v2.0
Pip4p2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39414,864,219 - 14,915,501 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl414,864,076 - 14,915,176 (+)EnsemblGRCm39 Ensembl
GRCm38414,864,219 - 14,915,260 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl414,864,076 - 14,915,176 (+)EnsemblGRCm38mm10GRCm38
MGSCv37414,791,366 - 14,842,407 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36414,791,366 - 14,842,407 (+)NCBIMGSCv36mm8
Celera414,666,242 - 14,716,763 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map46.41NCBI
Pip4p2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8533,057,046 - 33,104,448 (+)NCBIGRCr8
mRatBN7.2528,259,821 - 28,307,225 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl528,259,760 - 28,307,225 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx530,414,507 - 30,461,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0532,007,188 - 32,054,448 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0531,967,347 - 32,014,607 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0528,395,517 - 28,442,924 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl528,395,296 - 28,442,924 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0533,079,533 - 33,126,623 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4529,329,329 - 29,376,733 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1529,329,328 - 29,376,729 (+)NCBI
Celera527,511,708 - 27,556,541 (+)NCBICelera
Cytogenetic Map5q13NCBI
Pip4p2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554177,771,218 - 7,825,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554177,769,365 - 7,825,892 (-)NCBIChiLan1.0ChiLan1.0
PIP4P2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27108,365,016 - 108,411,716 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1883,904,246 - 83,950,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0887,657,202 - 87,704,355 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1889,610,315 - 89,640,736 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl889,611,726 - 89,639,419 (-)Ensemblpanpan1.1panPan2
PIP4P2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12936,376,211 - 36,410,680 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2936,377,413 - 36,419,132 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2936,528,349 - 36,584,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02936,577,248 - 36,633,018 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12936,597,823 - 36,653,297 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02936,579,206 - 36,635,139 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02937,017,626 - 37,073,778 (-)NCBIUU_Cfam_GSD_1.0
Pip4p2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,122,960 - 43,172,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365444,618,660 - 4,670,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365444,621,222 - 4,669,808 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIP4P2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl445,826,326 - 45,892,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1445,825,415 - 45,891,192 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2449,447,375 - 49,512,725 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIP4P2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1886,059,522 - 86,111,027 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl886,059,397 - 86,107,014 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603954,723,306 - 54,803,988 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004841953   ⟹   XP_004842010
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624744924,211 - 978,625 (+)NCBI
RefSeq Acc Id: XM_021255955   ⟹   XP_021111614
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624744924,211 - 978,625 (+)NCBI
RefSeq Acc Id: XM_021255956   ⟹   XP_021111615
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624744939,719 - 978,625 (+)NCBI
RefSeq Acc Id: XM_021255957   ⟹   XP_021111616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624744939,716 - 978,625 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842010 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111614 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111615 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111616 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022018
  ENSHGLP00100009715
Reference Protein Sequences
RefSeq Acc Id: XP_004842010   ⟸   XM_004841953
- Peptide Label: isoform X1
- UniProtKB: G5BBP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111614   ⟸   XM_021255955
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J0S1 (UniProtKB/TrEMBL),   G5BBP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111616   ⟸   XM_021255957
- Peptide Label: isoform X4
- UniProtKB: G5BBP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111615   ⟸   XM_021255956
- Peptide Label: isoform X3
- UniProtKB: G5BBP5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015708 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLG00100007202 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022228 ENTREZGENE, UniProtKB/TrEMBL
  ENSHGLT00100009826 UniProtKB/TrEMBL
InterPro PtdIns-P2-Ptase UniProtKB/TrEMBL
NCBI Gene Pip4p2 ENTREZGENE
PANTHER PTHR21014 UniProtKB/TrEMBL
  TYPE 2 PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE 4-PHOSPHATASE UniProtKB/TrEMBL
Pfam Tmemb_55A UniProtKB/TrEMBL
UniProt A0A0P6J0S1 ENTREZGENE, UniProtKB/TrEMBL
  G5BBP5 ENTREZGENE, UniProtKB/TrEMBL