Trib3 (tribbles pseudokinase 3) - Rat Genome Database

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Gene: Trib3 (tribbles pseudokinase 3) Heterocephalus glaber
Analyze
Symbol: Trib3
Name: tribbles pseudokinase 3
RGD ID: 18900553
Description: ENCODES a protein that exhibits enzyme binding (ortholog); kinase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tribbles homolog 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,484,863 - 1,494,829 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,486,223 - 1,494,005 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:25044179   PMID:30032202  


Genomics

Comparative Map Data
Trib3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,484,863 - 1,494,829 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,486,223 - 1,494,005 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TRIB3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820380,760 - 397,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20362,835 - 397,559 (+)EnsemblGRCh38hg38GRCh38
GRCh3720361,404 - 378,203 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3620309,308 - 326,203 (+)NCBINCBI36Build 36hg18NCBI36
Build 3420309,307 - 326,201NCBI
Celera20456,158 - 473,052 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20312,732 - 329,628 (+)NCBIHuRef
CHM1_120361,309 - 361,866 (+)NCBICHM1_1
T2T-CHM13v2.020424,107 - 440,963 (+)NCBIT2T-CHM13v2.0
Trib3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,179,345 - 152,185,980 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,179,342 - 152,185,952 (-)EnsemblGRCm39 Ensembl
GRCm382152,337,425 - 152,344,060 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,337,422 - 152,344,032 (-)EnsemblGRCm38mm10GRCm38
MGSCv372152,163,161 - 152,169,796 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362152,028,863 - 152,035,473 (-)NCBIMGSCv36mm8
Celera2158,151,551 - 158,158,172 (-)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Trib3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,269,939 - 161,275,533 (-)NCBIGRCr8
mRatBN7.23140,809,634 - 140,815,230 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,809,043 - 140,814,497 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,714,722 - 144,720,327 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,298,562 - 153,304,165 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,038,803 - 151,044,379 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,814,056 - 147,819,650 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,813,473 - 147,819,571 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,162,197 - 154,167,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,664,641 - 142,670,135 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,569,627 - 142,575,693 (-)NCBI
Celera3139,561,433 - 139,567,041 (-)NCBICelera
Cytogenetic Map3q41NCBI
Trib3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597260,790 - 265,326 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955597259,209 - 265,896 (+)NCBIChiLan1.0ChiLan1.0
TRIB3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,469,634 - 1,485,660 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,466,483 - 1,482,488 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020583,267 - 605,416 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120359,470 - 375,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20359,879 - 375,486 (+)Ensemblpanpan1.1panPan2
TRIB3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,450,281 - 20,461,141 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,451,001 - 20,457,510 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,103,931 - 20,114,798 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,143,266 - 21,154,114 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,143,273 - 21,150,479 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,418,511 - 20,429,379 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,524,537 - 20,535,390 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,955,034 - 20,966,099 (-)NCBIUU_Cfam_GSD_1.0
Trib3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,645,481 - 169,660,276 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,077,850 - 18,083,553 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,077,850 - 18,082,817 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIB3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,807,582 - 34,816,451 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,808,273 - 34,819,592 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,595,609 - 39,602,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIB3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1235,512,911 - 35,530,856 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl235,512,861 - 35,530,966 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,686,687 - 7,704,641 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000021217   ⟹   ENSHGLP00000021014
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247411,484,863 - 1,494,829 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000021218   ⟹   ENSHGLP00000021015
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247411,486,543 - 1,494,829 (+)Ensembl
RefSeq Acc Id: XM_004841146   ⟹   XP_004841203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247411,486,223 - 1,494,005 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004841203 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004841203   ⟸   XM_004841146
RefSeq Acc Id: ENSHGLP00000021014   ⟸   ENSHGLT00000021217
RefSeq Acc Id: ENSHGLP00000021015   ⟸   ENSHGLT00000021218


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015018 Ensembl
NCBI Gene Trib3 ENTREZGENE