Spice1 (spindle and centriole associated protein 1) - Rat Genome Database

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Gene: Spice1 (spindle and centriole associated protein 1) Heterocephalus glaber
Analyze
Symbol: Spice1
Name: spindle and centriole associated protein 1
RGD ID: 18900472
Description: INVOLVED IN metaphase chromosome alignment (inferred); mitotic spindle assembly (inferred); regulation of centriole replication (inferred); ASSOCIATED WITH genetic disease (ortholog); spermatogenic failure 20 (ortholog); FOUND IN centriole (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Coiled-coil domain-containing protein 52; spindle and centriole-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,091,106 - 35,140,631 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473135,092,861 - 35,139,155 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA)
centrosome  (IEA)
cytoplasm  (IEA)
cytoskeleton  (IEA)
spindle  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spice1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473135,091,106 - 35,140,631 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473135,092,861 - 35,139,155 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPICE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383113,442,718 - 113,515,156 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3113,442,718 - 113,515,187 (-)EnsemblGRCh38hg38GRCh38
GRCh373113,161,565 - 113,234,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363114,644,260 - 114,716,693 (-)NCBINCBI36Build 36hg18NCBI36
Celera3111,570,154 - 111,642,619 (-)NCBICelera
Cytogenetic Map3q13.2NCBI
HuRef3110,536,451 - 110,608,943 (-)NCBIHuRef
CHM1_13113,125,150 - 113,197,492 (-)NCBICHM1_1
T2T-CHM13v2.03116,163,861 - 116,236,319 (-)NCBIT2T-CHM13v2.0
Spice1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391644,167,761 - 44,208,857 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1644,167,484 - 44,208,860 (+)EnsemblGRCm39 Ensembl
GRCm381644,347,399 - 44,388,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1644,347,121 - 44,388,497 (+)EnsemblGRCm38mm10GRCm38
MGSCv371644,347,514 - 44,388,605 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361644,266,789 - 44,307,718 (+)NCBIMGSCv36mm8
Celera1644,705,532 - 44,746,724 (+)NCBICelera
Cytogenetic Map16B4NCBI
cM Map1628.67NCBI
Spice1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81169,796,490 - 69,838,304 (-)NCBIGRCr8
mRatBN7.21156,289,291 - 56,332,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,290,540 - 56,332,447 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1165,103,744 - 65,145,458 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01157,765,989 - 57,807,699 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01156,835,182 - 56,877,035 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01161,250,649 - 61,294,116 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1161,251,696 - 61,294,022 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01165,357,559 - 65,402,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41157,836,725 - 57,878,435 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11157,894,314 - 57,936,024 (-)NCBI
Celera1155,849,911 - 55,891,631 (-)NCBICelera
Cytogenetic Map11q21NCBI
Spice1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542713,585,493 - 13,626,662 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542713,584,841 - 13,626,656 (-)NCBIChiLan1.0ChiLan1.0
SPICE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22111,441,069 - 111,518,807 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13111,446,106 - 111,523,586 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03110,585,366 - 110,657,457 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13117,507,941 - 117,579,180 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3117,507,941 - 117,570,601 (-)Ensemblpanpan1.1panPan2
SPICE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13317,765,216 - 17,822,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3317,765,200 - 17,822,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3317,867,602 - 17,925,259 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03318,009,274 - 18,066,942 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3318,009,266 - 18,066,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13317,813,005 - 17,870,837 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03317,860,290 - 17,917,945 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03318,410,655 - 18,468,370 (-)NCBIUU_Cfam_GSD_1.0
Spice1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602136,458,894 - 136,519,908 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365361,001,717 - 1,063,023 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365361,002,017 - 1,063,000 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPICE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13146,421,221 - 146,469,682 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113146,411,280 - 146,469,695 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213155,996,542 - 156,051,130 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPICE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12267,347,738 - 67,413,403 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2267,355,716 - 67,412,729 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604199,062,988 - 99,127,076 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019527   ⟹   ENSHGLP00000019336
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473135,091,106 - 35,140,631 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019528   ⟹   ENSHGLP00000019337
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473135,091,106 - 35,140,631 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000019529   ⟹   ENSHGLP00000019338
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473135,094,152 - 35,136,944 (+)Ensembl
RefSeq Acc Id: XM_004835823   ⟹   XP_004835880
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473135,092,861 - 35,139,155 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004835880 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97736 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019338
Reference Protein Sequences
RefSeq Acc Id: XP_004835880   ⟸   XM_004835823
- UniProtKB: G5AL26 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019337   ⟸   ENSHGLT00000019528
RefSeq Acc Id: ENSHGLP00000019336   ⟸   ENSHGLT00000019527
RefSeq Acc Id: ENSHGLP00000019338   ⟸   ENSHGLT00000019529


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013844 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019529 ENTREZGENE
InterPro SPICE1 UniProtKB/TrEMBL
NCBI Gene Spice1 ENTREZGENE
PANTHER SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1 UniProtKB/TrEMBL
  SPINDLE AND CENTRIOLE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
Pfam SPICE UniProtKB/TrEMBL
UniProt G5AL26 ENTREZGENE, UniProtKB/TrEMBL