Cacna2d4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4) - Rat Genome Database

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Gene: Cacna2d4 (calcium voltage-gated channel auxiliary subunit alpha2delta 4) Heterocephalus glaber
Analyze
Symbol: Cacna2d4
Name: calcium voltage-gated channel auxiliary subunit alpha2delta 4
RGD ID: 18900470
Description: ENCODES a protein that exhibits voltage-gated calcium channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); detection of light stimulus involved in visual perception (ortholog); ASSOCIATED WITH cone dystrophy (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 14 (ortholog); FOUND IN voltage-gated calcium channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent calcium channel subunit alpha-2/delta-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,998,440 - 11,096,340 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,998,772 - 11,101,781 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cacna2d4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473510,998,440 - 11,096,340 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473510,998,772 - 11,101,781 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CACNA2D4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38121,791,963 - 1,918,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl121,791,963 - 1,918,666 (-)EnsemblGRCh38hg38GRCh38
GRCh37121,901,129 - 2,027,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36121,771,384 - 1,898,131 (-)NCBINCBI36Build 36hg18NCBI36
Build 34121,771,383 - 1,898,131NCBI
Celera123,508,846 - 3,635,489 (-)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef121,755,836 - 1,882,081 (-)NCBIHuRef
CHM1_1121,900,243 - 2,027,042 (-)NCBICHM1_1
T2T-CHM13v2.0121,788,097 - 1,914,979 (-)NCBIT2T-CHM13v2.0
Cacna2d4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,213,435 - 119,329,368 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,213,487 - 119,329,368 (+)EnsemblGRCm39 Ensembl
GRCm386119,236,524 - 119,352,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,236,526 - 119,352,407 (+)EnsemblGRCm38mm10GRCm38
MGSCv376119,186,544 - 119,302,425 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,202,145 - 119,316,176 (+)NCBIMGSCv36mm8
Celera6121,069,189 - 121,185,256 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.62NCBI
Cacna2d4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,080,877 - 154,197,369 (+)NCBIGRCr8
mRatBN7.24152,408,588 - 152,521,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,408,657 - 152,521,268 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4158,674,950 - 158,787,884 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04154,458,645 - 154,571,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,081,982 - 153,194,916 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04151,298,548 - 151,409,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4151,298,548 - 151,409,263 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04217,213,923 - 217,324,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,546,301 - 155,658,429 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4141,273,149 - 141,384,111 (+)NCBICelera
Cytogenetic Map4q42NCBI
Cacna2d4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554544,331,370 - 4,430,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554544,329,520 - 4,430,460 (-)NCBIChiLan1.0ChiLan1.0
CACNA2D4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2107,334,932 - 7,458,684 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1127,331,691 - 7,455,443 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,906,894 - 2,030,991 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1121,855,519 - 1,981,133 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl121,857,221 - 1,980,769 (-)Ensemblpanpan1.1panPan2
CACNA2D4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12743,840,190 - 43,961,067 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2743,844,529 - 44,041,637 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,724,231 - 2,844,127 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02744,211,255 - 44,331,194 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2744,214,806 - 44,331,252 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12744,139,305 - 44,259,127 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02744,111,973 - 44,232,035 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,081,956 - 2,201,847 (+)NCBIUU_Cfam_GSD_1.0
Cacna2d4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945107,064,213 - 107,172,647 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366062,012,156 - 2,118,167 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366062,011,454 - 2,118,255 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CACNA2D4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,808,378 - 68,906,249 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,805,092 - 68,899,397 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2571,176,984 - 71,230,429 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CACNA2D4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,837,811 - 1,972,523 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,841,070 - 1,971,874 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,353,111 - 6,488,102 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021249798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01010886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000013471   ⟹   ENSHGLP00000013331
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473510,998,440 - 11,096,340 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000013472   ⟹   ENSHGLP00000013332
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473510,998,567 - 11,096,340 (+)Ensembl
RefSeq Acc Id: XM_021249798   ⟹   XP_021105457
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473510,998,772 - 11,101,781 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021105457 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021105457   ⟸   XM_021249798
RefSeq Acc Id: ENSHGLP00000013331   ⟸   ENSHGLT00000013471
RefSeq Acc Id: ENSHGLP00000013332   ⟸   ENSHGLT00000013472


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009530 Ensembl
NCBI Gene Cacna2d4 ENTREZGENE