Snrpn (small nuclear ribonucleoprotein polypeptide N) - Rat Genome Database

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Gene: Snrpn (small nuclear ribonucleoprotein polypeptide N) Heterocephalus glaber
Analyze
Symbol: Snrpn
Name: small nuclear ribonucleoprotein polypeptide N
RGD ID: 18900440
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN response to hormone (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN nucleoplasm (ortholog); U1 snRNP (ortholog); U2 snRNP (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein-associated protein N
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476870,186 - 75,427 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476870,186 - 75,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476870,186 - 75,427 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476870,186 - 75,496 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNRPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381524,823,637 - 24,978,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1524,823,637 - 24,978,723 (+)EnsemblGRCh38hg38GRCh38
GRCh371525,068,784 - 25,223,870 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361522,619,887 - 23,215,702 (+)NCBINCBI36Build 36hg18NCBI36
Build 341522,619,886 - 22,774,822NCBI
Celera153,232,650 - 3,826,611 (+)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef153,206,378 - 3,359,653 (+)NCBIHuRef
CHM1_11525,018,271 - 25,173,272 (+)NCBICHM1_1
T2T-CHM13v2.01522,560,289 - 22,715,388 (+)NCBIT2T-CHM13v2.0
Snrpn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39759,632,243 - 60,099,925 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl759,632,243 - 59,789,967 (-)EnsemblGRCm39 Ensembl
GRCm38759,982,495 - 60,450,177 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,982,495 - 60,140,219 (-)EnsemblGRCm38mm10GRCm38
MGSCv37767,127,388 - 67,285,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36759,862,064 - 59,884,054 (-)NCBIMGSCv36mm8
MGSCv36749,357,757 - 49,379,862 (-)NCBIMGSCv36mm8
Cytogenetic Map7B5NCBI
cM Map734.04NCBI
Snrpn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81120,316,846 - 120,338,919 (-)NCBIGRCr8
mRatBN7.21111,101,327 - 111,123,400 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1111,101,329 - 111,123,634 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1118,564,367 - 118,586,432 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01125,303,172 - 125,325,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01118,264,060 - 118,286,125 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01195,074,328 - 195,096,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1195,074,330 - 195,096,460 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01202,123,036 - 202,145,168 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41111,570,605 - 111,592,659 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11111,648,947 - 111,671,002 (-)NCBI
Celera1104,690,938 - 104,713,013 (-)NCBICelera
Cytogenetic Map1q22NCBI
Snrpn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541631,668,736 - 31,677,219 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541631,668,789 - 31,674,144 (+)NCBIChiLan1.0ChiLan1.0
SNURF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21610,348,992 - 10,368,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11513,995,451 - 14,008,571 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0154,971,565 - 4,993,651 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11522,216,736 - 22,371,062 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1522,347,242 - 22,371,062 (+)Ensemblpanpan1.1panPan2
SNRPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,837,582 - 35,842,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,837,468 - 35,862,877 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,500,352 - 38,511,495 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0336,209,115 - 36,220,266 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,208,976 - 36,234,228 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,725,139 - 35,736,279 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,995,253 - 36,006,405 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,139,738 - 36,150,879 (-)NCBIUU_Cfam_GSD_1.0
Snrpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640123,746,205 - 123,751,035 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680585,051 - 94,547 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680586,244 - 91,074 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPN
(Sus scrofa - pig)		 No map positions available.
SNRPN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12657,087,556 - 57,198,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2657,087,695 - 57,091,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605440,033,120 - 40,095,454 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013075131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01047716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000016837   ⟹   ENSHGLP00000016666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462476870,186 - 75,427 (-)Ensembl
RefSeq Acc Id: XM_013075131   ⟹   XP_012930585
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476870,186 - 75,496 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012930585 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016666
  ENSHGLP00100022517
Reference Protein Sequences
RefSeq Acc Id: XP_012930585   ⟸   XM_013075131
- UniProtKB: A0A0P6J801 (UniProtKB/TrEMBL),   G5C215 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000016666   ⟸   ENSHGLT00000016837


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011924 Ensembl, ENTREZGENE
  ENSHGLG00100016559 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000016837 ENTREZGENE
  ENSHGLT00100022750 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  snRNP-assoc_SmB/SmN UniProtKB/TrEMBL
KEGG Report hgl:101718012 UniProtKB/TrEMBL
NCBI Gene Snrpn ENTREZGENE
PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PIRSF snRNP_SmB/SmN UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A0P6J801 ENTREZGENE, UniProtKB/TrEMBL
  G5C215 ENTREZGENE, UniProtKB/TrEMBL