Cdhr4 (cadherin related family member 4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cdhr4 (cadherin related family member 4) Heterocephalus glaber
Analyze
Symbol: Cdhr4
Name: cadherin related family member 4
RGD ID: 18900372
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-related family member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,707,040 - 3,714,348 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,707,115 - 3,714,615 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cdhr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,707,040 - 3,714,348 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,707,115 - 3,714,615 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDHR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,790,732 - 49,802,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,790,732 - 49,799,873 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,828,165 - 49,837,306 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,810,669 - 49,812,272 (-)NCBINCBI36Build 36hg18NCBI36
Celera349,793,740 - 49,802,731 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,887,778 - 49,896,303 (-)NCBIHuRef
CHM1_1349,780,227 - 49,789,315 (-)NCBICHM1_1
T2T-CHM13v2.0349,820,605 - 49,832,790 (-)NCBIT2T-CHM13v2.0
Cdhr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,869,656 - 107,876,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,869,696 - 107,876,883 (+)EnsemblGRCm39 Ensembl
GRCm389107,992,457 - 107,999,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,992,497 - 107,999,684 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,897,372 - 107,902,011 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,897,378 - 107,902,010 (+)NCBIMGSCv36mm8
Celera9107,603,500 - 107,608,139 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Cdhr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,561,206 - 117,594,456 (+)NCBIGRCr8
mRatBN7.28108,682,594 - 108,690,358 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,682,613 - 108,690,367 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08116,771,377 - 116,779,242 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,771,982 - 116,773,868 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.08116,125,824 - 116,158,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,262,207 - 113,269,894 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,281,655 - 113,285,203 (+)NCBI
Celera8107,987,299 - 107,995,164 (+)NCBICelera
Cytogenetic Map8q32NCBI
Cdhr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,683,570 - 1,690,834 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,644,995 - 1,690,897 (-)NCBIChiLan1.0ChiLan1.0
CDHR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,776,987 - 49,788,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,777,898 - 49,793,698 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,722,563 - 49,734,040 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,958,512 - 50,969,623 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,958,548 - 50,967,792 (-)Ensemblpanpan1.1panPan2
CDHR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,473,450 - 39,482,158 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,473,848 - 39,482,144 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,391,580 - 39,402,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,827,611 - 39,838,858 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,816,974 - 39,838,844 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,194,644 - 39,206,069 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,598,879 - 39,610,038 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,878,446 - 39,889,860 (+)NCBIUU_Cfam_GSD_1.0
Cdhr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,639,020 - 64,646,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,399,611 - 1,406,876 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,399,611 - 1,406,876 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDHR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,322,034 - 32,329,337 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,322,030 - 32,329,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,501,281 - 35,509,352 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDHR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666041155,791,750 - 155,803,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000016007   ⟹   ENSHGLP00000015841
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247303,707,040 - 3,714,348 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000016008   ⟹   ENSHGLP00000015842
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247303,707,040 - 3,714,348 (-)Ensembl
RefSeq Acc Id: XM_013070130   ⟹   XP_012925584
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,604 (-)NCBI
RefSeq Acc Id: XM_013070131   ⟹   XP_012925585
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,601 (-)NCBI
RefSeq Acc Id: XM_013070145   ⟹   XP_012925599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,115 - 3,714,596 (-)NCBI
RefSeq Acc Id: XM_021263293   ⟹   XP_021118952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,609 (-)NCBI
RefSeq Acc Id: XM_021263330   ⟹   XP_021118989
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,607 (-)NCBI
RefSeq Acc Id: XM_021263426   ⟹   XP_021119085
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,610 (-)NCBI
RefSeq Acc Id: XM_021263445   ⟹   XP_021119104
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,279 - 3,714,611 (-)NCBI
RefSeq Acc Id: XM_021263491   ⟹   XP_021119150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,115 - 3,714,606 (-)NCBI
RefSeq Acc Id: XM_021263545   ⟹   XP_021119204
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,115 - 3,714,609 (-)NCBI
RefSeq Acc Id: XR_002397109
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,707,115 - 3,714,615 (-)NCBI
RefSeq Acc Id: XR_002397110
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247303,708,076 - 3,714,614 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021119204   ⟸   XM_021263545
- Peptide Label: isoform X8
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119150   ⟸   XM_021263491
- Peptide Label: isoform X7
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925599   ⟸   XM_013070145
- Peptide Label: isoform X9
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119104   ⟸   XM_021263445
- Peptide Label: isoform X6
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119085   ⟸   XM_021263426
- Peptide Label: isoform X5
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118952   ⟸   XM_021263293
- Peptide Label: isoform X1
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118989   ⟸   XM_021263330
- Peptide Label: isoform X2
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925584   ⟸   XM_013070130
- Peptide Label: isoform X3
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925585   ⟸   XM_013070131
- Peptide Label: isoform X4
- UniProtKB: G5BZX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000015841   ⟸   ENSHGLT00000016007
RefSeq Acc Id: ENSHGLP00000015842   ⟸   ENSHGLT00000016008


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011328 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016008 ENTREZGENE
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
NCBI Gene Cdhr4 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  CADHERIN-RELATED FAMILY MEMBER 4 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin-like UniProtKB/TrEMBL
UniProt G5BZX3 ENTREZGENE, UniProtKB/TrEMBL