Stk38 (serine/threonine kinase 38) - Rat Genome Database

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Gene: Stk38 (serine/threonine kinase 38) Heterocephalus glaber
Analyze
Symbol: Stk38
Name: serine/threonine kinase 38
RGD ID: 18899969
Description: ENCODES a protein that exhibits histone reader activity (ortholog); UFM1-modified protein reader activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); postsynapse organization (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN glutamatergic synapse (ortholog); site of double-strand break (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Serine/threonine-protein kinase 38
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,227,417 - 21,271,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,220,121 - 21,271,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stk38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,227,417 - 21,271,964 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,220,121 - 21,271,065 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STK38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,493,892 - 36,547,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,493,892 - 36,547,479 (-)EnsemblGRCh38hg38GRCh38
GRCh37636,461,669 - 36,515,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,569,647 - 36,623,225 (-)NCBINCBI36Build 36hg18NCBI36
Build 34636,569,647 - 36,623,225NCBI
Celera638,016,709 - 38,070,290 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef636,180,534 - 36,234,118 (-)NCBIHuRef
CHM1_1636,463,467 - 36,517,045 (-)NCBICHM1_1
T2T-CHM13v2.0636,314,555 - 36,368,143 (-)NCBIT2T-CHM13v2.0
Stk38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,189,854 - 29,226,979 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,189,854 - 29,226,969 (-)EnsemblGRCm39 Ensembl
GRCm381728,970,880 - 29,008,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,970,880 - 29,007,995 (-)EnsemblGRCm38mm10GRCm38
MGSCv371729,107,830 - 29,144,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,698,474 - 28,735,604 (-)NCBIMGSCv36mm8
Celera1729,526,832 - 29,564,008 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.03NCBI
Stk38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,035,923 - 7,070,657 (-)NCBIGRCr8
mRatBN7.2207,034,245 - 7,067,803 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,034,242 - 7,068,198 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,746,129 - 7,779,641 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,107,989 - 7,141,501 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,582,947 - 7,616,454 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,224,300 - 6,257,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,224,296 - 6,257,604 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0208,472,801 - 8,506,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4207,257,546 - 7,264,441 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1207,257,777 - 7,264,668 (-)NCBI
Celera208,585,884 - 8,592,779 (-)NCBICelera
Cytogenetic Map20p12NCBI
Stk38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554374,142,285 - 4,186,373 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554374,142,285 - 4,186,376 (-)NCBIChiLan1.0ChiLan1.0
STK38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,963,053 - 51,016,986 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,832,690 - 46,886,644 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,056,585 - 36,110,531 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,255,183 - 37,308,102 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,255,183 - 37,308,102 (-)Ensemblpanpan1.1panPan2
STK38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,594,090 - 5,636,581 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,595,840 - 5,636,692 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha125,613,974 - 5,655,643 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,942,106 - 5,984,662 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,942,112 - 5,984,782 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,597,466 - 5,640,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,675,922 - 5,718,477 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,775,775 - 5,817,428 (-)NCBIUU_Cfam_GSD_1.0
Stk38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,069,180 - 41,117,761 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,842,477 - 22,891,057 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,842,477 - 22,891,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STK38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,206,541 - 32,253,624 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1732,206,532 - 32,253,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,107,044 - 37,154,525 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STK38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,587,246 - 35,641,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1735,587,256 - 35,642,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604436,437,565 - 36,491,888 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000024146   ⟹   ENSHGLP00000023928
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475421,227,417 - 21,271,964 (+)Ensembl
RefSeq Acc Id: XM_004846682   ⟹   XP_004846739
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,227,233 - 21,271,065 (+)NCBI
RefSeq Acc Id: XM_004846684   ⟹   XP_004846741
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,227,562 - 21,271,065 (+)NCBI
RefSeq Acc Id: XM_021259915   ⟹   XP_021115574
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,227,921 - 21,271,065 (+)NCBI
RefSeq Acc Id: XM_021259916   ⟹   XP_021115575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,220,123 - 21,271,065 (+)NCBI
RefSeq Acc Id: XM_021259917   ⟹   XP_021115576
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,220,121 - 21,271,065 (+)NCBI
RefSeq Acc Id: XM_021259918   ⟹   XP_021115577
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475421,220,439 - 21,271,065 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021115576   ⟸   XM_021259917
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115575   ⟸   XM_021259916
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115577   ⟸   XM_021259918
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004846739   ⟸   XM_004846682
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004846741   ⟸   XM_004846684
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115574   ⟸   XM_021259915
- UniProtKB: G5BEV6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023928   ⟸   ENSHGLT00000024146


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017058 Ensembl, ENTREZGENE
  ENSHGLG00100018360 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000024146 ENTREZGENE
  ENSHGLT00100025275 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro AGC-kinase_C UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report hgl:101712141 UniProtKB/TrEMBL
NCBI Gene Stk38 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE 38 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
  Pkinase_C UniProtKB/TrEMBL
PROSITE AGC_KINASE_CTER UniProtKB/TrEMBL
  PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt G5BEV6 ENTREZGENE, UniProtKB/TrEMBL