Snai3 (snail family transcriptional repressor 3) - Rat Genome Database

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Gene: Snai3 (snail family transcriptional repressor 3) Heterocephalus glaber
Analyze
Symbol: Snai3
Name: snail family transcriptional repressor 3
RGD ID: 18899786
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH 16Q24.3 Microdeletion Syndrome (ortholog); autosomal recessive chronic granulomatous disease 4 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein SNAI3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746893,952 - 897,762 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746891,212 - 897,743 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snai3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624746893,952 - 897,762 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624746891,212 - 897,743 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNAI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,677,688 - 88,686,507 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,677,688 - 88,686,507 (-)EnsemblGRCh38hg38GRCh38
GRCh371688,744,096 - 88,752,915 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,271,591 - 87,280,383 (-)NCBINCBI36Build 36hg18NCBI36
Build 341687,271,591 - 87,280,290NCBI
Celera1673,813,753 - 73,822,552 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1674,438,454 - 74,447,255 (-)NCBIHuRef
CHM1_11690,155,427 - 90,164,201 (-)NCBICHM1_1
T2T-CHM13v2.01694,746,814 - 94,755,643 (-)NCBIT2T-CHM13v2.0
Snai3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398123,180,943 - 123,187,546 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8123,180,947 - 123,187,472 (-)EnsemblGRCm39 Ensembl
GRCm388122,454,204 - 122,460,809 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,454,208 - 122,460,733 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,978,106 - 124,984,592 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368125,340,296 - 125,346,782 (-)NCBIMGSCv36mm8
Celera8126,683,317 - 126,689,803 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map871.07NCBI
Snai3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,425,311 - 67,437,830 (-)NCBIGRCr8
mRatBN7.21950,516,771 - 50,529,295 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1950,516,771 - 50,523,486 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1957,311,968 - 57,318,658 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,991,700 - 57,998,415 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01960,210,589 - 60,217,281 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01955,276,211 - 55,290,031 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1955,277,549 - 55,284,663 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,987,197 - 65,999,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,742,687 - 52,749,406 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,748,224 - 52,758,577 (-)NCBI
Celera1949,756,250 - 49,762,965 (-)NCBICelera
Cytogenetic Map19q12NCBI
Snai3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,593,351 - 2,599,175 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,593,530 - 2,599,105 (-)NCBIChiLan1.0ChiLan1.0
SNAI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21898,450,841 - 98,460,023 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116104,362,977 - 104,371,850 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01669,390,929 - 69,400,971 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11689,050,883 - 89,059,704 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1689,051,479 - 89,059,704 (-)Ensemblpanpan1.1panPan2
SNAI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,661,122 - 64,668,589 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl564,661,190 - 64,667,690 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,672,369 - 64,681,055 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0564,881,091 - 64,889,785 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl564,881,047 - 64,887,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1564,907,276 - 64,915,954 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,738,829 - 64,747,685 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,145,011 - 65,153,705 (+)NCBIUU_Cfam_GSD_1.0
Snai3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,248,159 - 25,254,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,001,782 - 1,008,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,001,788 - 1,007,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAI3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6988,990 - 996,247 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16988,975 - 996,268 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNAI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1574,062,241 - 74,071,840 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660471,616,290 - 1,625,285 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004843208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01025582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000026486   ⟹   ENSHGLP00000026252
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624746893,952 - 897,762 (+)Ensembl
RefSeq Acc Id: XM_004843208   ⟹   XP_004843265
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624746891,212 - 897,743 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843265 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004843265   ⟸   XM_004843208
- UniProtKB: G5C2U3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026252   ⟸   ENSHGLT00000026486


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018681 Ensembl
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Cu_oxidase_Cu_BS UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Snai3 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN SNAI3 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE MULTICOPPER_OXIDASE2 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt G5C2U3 ENTREZGENE, UniProtKB/TrEMBL