Gpihbp1 (glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1) - Rat Genome Database

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Gene: Gpihbp1 (glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1) Heterocephalus glaber
Analyze
Symbol: Gpihbp1
Name: glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
RGD ID: 18899724
Description: ENCODES a protein that exhibits high-density lipoprotein particle binding (ortholog); lipoprotein lipase activator activity (ortholog); lipoprotein particle binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); cholesterol transport (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); familial GPIHBP1 deficiency (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); catalytic complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,484,772 - 13,491,570 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,486,368 - 13,492,668 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gpihbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,484,772 - 13,491,570 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,486,368 - 13,492,668 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GPIHBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388143,213,218 - 143,217,170 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8143,213,218 - 143,217,170 (+)EnsemblGRCh38hg38GRCh38
GRCh378144,295,093 - 144,299,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368144,366,443 - 144,370,418 (+)NCBINCBI36Build 36hg18NCBI36
Celera8140,603,655 - 140,607,614 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,547,646 - 139,551,566 (+)NCBIHuRef
CHM1_18144,335,309 - 144,339,286 (+)NCBICHM1_1
T2T-CHM13v2.08144,358,507 - 144,362,402 (+)NCBIT2T-CHM13v2.0
Gpihbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391575,468,479 - 75,470,062 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1575,468,477 - 75,471,330 (+)EnsemblGRCm39 Ensembl
GRCm381575,596,630 - 75,598,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1575,596,628 - 75,599,481 (+)EnsemblGRCm38mm10GRCm38
MGSCv371575,427,088 - 75,428,643 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361575,423,913 - 75,425,468 (+)NCBIMGSCv36mm8
Celera1577,096,812 - 77,098,367 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.59NCBI
Gpihbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87109,166,334 - 109,169,448 (+)NCBIGRCr8
mRatBN7.27107,285,584 - 107,288,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7107,285,654 - 107,288,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7109,020,613 - 109,023,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07111,244,277 - 111,247,324 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07111,190,206 - 111,193,253 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07116,632,496 - 116,635,543 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,632,506 - 116,634,293 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07116,525,703 - 116,528,750 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47113,538,424 - 113,541,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7103,648,499 - 103,651,546 (+)NCBICelera
Cytogenetic Map7q34NCBI
Gpihbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554541,970,626 - 1,973,743 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554541,965,627 - 1,972,479 (+)NCBIChiLan1.0ChiLan1.0
GPIHBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,690,170 - 160,694,121 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18136,207,643 - 136,211,594 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,960,255 - 139,964,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,980,151 - 142,984,629 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,980,151 - 142,985,429 (+)Ensemblpanpan1.1panPan2
GPIHBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11337,005,499 - 37,007,214 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1337,005,512 - 37,007,074 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,958,242 - 36,959,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,477,245 - 37,478,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,477,270 - 37,478,835 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11337,149,764 - 37,151,494 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01337,268,265 - 37,270,004 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,745,112 - 37,746,841 (+)NCBIUU_Cfam_GSD_1.0
Gpihbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,371,996 - 1,375,593 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364708,798,095 - 8,800,176 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPIHBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,254,565 - 1,256,577 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,253,401 - 1,256,921 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.241,344,593 - 1,347,007 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPIHBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18137,433,669 - 137,440,681 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8137,436,997 - 137,440,909 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660392,499,974 - 2,506,432 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008803   ⟹   ENSHGLP00000008708
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473513,484,772 - 13,491,570 (-)Ensembl
RefSeq Acc Id: XM_013068320   ⟹   XP_012923774
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,486,368 - 13,491,893 (-)NCBI
RefSeq Acc Id: XM_013068324   ⟹   XP_012923778
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473513,486,368 - 13,492,668 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012923774 (Get FASTA)   NCBI Sequence Viewer  
  XP_012923778 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008708
Reference Protein Sequences
RefSeq Acc Id: XP_012923778   ⟸   XM_013068324
- UniProtKB: G5AWG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923774   ⟸   XM_013068320
- UniProtKB: G5AWG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008708   ⟸   ENSHGLT00000008803


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006275 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008803 ENTREZGENE
Gene3D-CATH CD59 UniProtKB/TrEMBL
InterPro CD59_antigen_CS UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene Gpihbp1 ENTREZGENE
PANTHER GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED HIGH DENSITY LIPOPROTEIN-BINDING PROTEIN 1 UniProtKB/TrEMBL
  UPAR/LY6 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
PROSITE LY6_UPAR UniProtKB/TrEMBL
Superfamily-SCOP Snake toxin-like UniProtKB/TrEMBL
UniProt G5AWG1 ENTREZGENE, UniProtKB/TrEMBL