Atg10 (autophagy related 10) - Rat Genome Database

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Gene: Atg10 (autophagy related 10) Heterocephalus glaber
Analyze
Symbol: Atg10
Name: autophagy related 10
RGD ID: 18899656
Description: ENCODES a protein that exhibits Atg12 conjugating enzyme activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); ER overload response (ortholog); positive regulation of protein modification process (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like-conjugating enzyme ATG10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247432,381,038 - 2,649,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247432,381,131 - 2,663,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Atg10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247432,381,038 - 2,649,322 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247432,381,131 - 2,663,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATG10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38581,972,023 - 82,256,133 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl581,972,023 - 82,276,857 (+)EnsemblGRCh38hg38GRCh38
GRCh37581,267,842 - 81,551,952 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36581,303,630 - 81,586,528 (+)NCBINCBI36Build 36hg18NCBI36
Build 34581,303,629 - 81,586,524NCBI
Celera577,171,858 - 77,456,206 (+)NCBICelera
Cytogenetic Map5q14.1-q14.2NCBI
HuRef576,475,213 - 76,759,595 (+)NCBIHuRef
CHM1_1580,700,529 - 80,984,394 (+)NCBICHM1_1
T2T-CHM13v2.0582,456,197 - 82,741,920 (+)NCBIT2T-CHM13v2.0
Atg10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391391,083,467 - 91,372,189 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1391,083,475 - 91,372,087 (-)EnsemblGRCm39 Ensembl
GRCm381390,935,348 - 91,224,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1390,935,356 - 91,223,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371391,074,954 - 91,363,592 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361391,410,021 - 91,682,672 (-)NCBIMGSCv36mm8
Celera1394,568,446 - 94,854,283 (-)NCBICelera
Cytogenetic Map13C3NCBI
cM Map1346.46NCBI
Atg10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8223,843,695 - 24,133,459 (-)NCBIGRCr8
mRatBN7.2222,109,304 - 22,398,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl222,108,426 - 22,398,233 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx229,158,574 - 29,449,352 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0227,258,921 - 27,549,707 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0222,075,993 - 22,374,108 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0219,853,546 - 20,152,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl219,853,546 - 20,152,884 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0219,729,784 - 20,026,450 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4221,076,289 - 21,374,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera218,236,510 - 18,521,138 (-)NCBICelera
Cytogenetic Map2q12NCBI
Atg10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541828,119,912 - 28,363,714 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541828,118,843 - 28,368,358 (-)NCBIChiLan1.0ChiLan1.0
ATG10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2433,050,282 - 33,338,120 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1531,205,637 - 31,516,727 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0533,029,074 - 33,315,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1533,345,591 - 33,632,229 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl533,348,306 - 33,615,883 (-)Ensemblpanpan1.1panPan2
ATG10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1325,214,203 - 25,436,448 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha326,451,651 - 26,672,807 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0325,127,757 - 25,350,301 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1325,081,956 - 25,303,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0325,049,747 - 25,270,877 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0325,330,817 - 25,551,944 (-)NCBIUU_Cfam_GSD_1.0
Atg10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213181,119,537 - 181,383,280 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364691,242,111 - 1,505,743 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364691,241,854 - 1,506,174 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl290,437,027 - 90,666,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1290,436,795 - 90,665,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2292,433,581 - 92,661,452 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1476,092,887 - 76,378,175 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl476,092,832 - 76,377,403 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604924,980,384 - 25,259,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021255721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021255728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01021222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01021234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01005203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000011055   ⟹   ENSHGLP00000010933
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247432,381,038 - 2,649,322 (+)Ensembl
RefSeq Acc Id: XM_021255721   ⟹   XP_021111380
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,383,434 - 2,649,891 (+)NCBI
RefSeq Acc Id: XM_021255722   ⟹   XP_021111381
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,383,445 - 2,663,640 (+)NCBI
RefSeq Acc Id: XM_021255723   ⟹   XP_021111382
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,381,230 - 2,663,640 (+)NCBI
RefSeq Acc Id: XM_021255724   ⟹   XP_021111383
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,381,131 - 2,663,640 (+)NCBI
RefSeq Acc Id: XM_021255725   ⟹   XP_021111384
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,383,427 - 2,649,281 (+)NCBI
RefSeq Acc Id: XM_021255726   ⟹   XP_021111385
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,383,427 - 2,582,242 (+)NCBI
RefSeq Acc Id: XM_021255728   ⟹   XP_021111387
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247432,381,230 - 2,663,640 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021111383   ⟸   XM_021255724
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ET70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111382   ⟸   XM_021255723
- Peptide Label: isoform X3
- UniProtKB: A0A0N8ET70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111387   ⟸   XM_021255728
- Peptide Label: isoform X6
- UniProtKB: A0A0N8ET70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111384   ⟸   XM_021255725
- Peptide Label: isoform X4
RefSeq Acc Id: XP_021111385   ⟸   XM_021255726
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021111380   ⟸   XM_021255721
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021111381   ⟸   XM_021255722
- Peptide Label: isoform X2
- UniProtKB: A0A0N8ET70 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000010933   ⟸   ENSHGLT00000011055


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007844 Ensembl, ENTREZGENE
  ENSHGLG00100000929 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011055 ENTREZGENE
  ENSHGLT00100001210 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1460.50 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_3 UniProtKB/TrEMBL
NCBI Gene Atg10 ENTREZGENE
PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
  UBIQUITIN-LIKE-CONJUGATING ENZYME ATG10 UniProtKB/TrEMBL
Pfam Autophagy_act_C UniProtKB/TrEMBL
UniProt A0A0N8ET70 ENTREZGENE, UniProtKB/TrEMBL