MUC13 (mucin 13, cell surface associated) - Rat Genome Database

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Gene: MUC13 (mucin 13, cell surface associated) Chlorocebus sabaeus
Analyze
Symbol: MUC13
Name: mucin 13, cell surface associated
RGD ID: 18793748
Description: ENCODES a protein that exhibits protein homodimerization activity (inferred); INVOLVED IN heart development (inferred); maintenance of gastrointestinal epithelium (inferred); ASSOCIATED WITH alkaptonuria (ortholog); familial hypocalciuric hypercalcemia (ortholog); Familial Thoracic Aortic Aneurysm 7 (ortholog); FOUND IN apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mucin-13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12255,898,876 - 55,930,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2255,899,901 - 55,930,454 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041110,391,185 - 110,418,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
MUC13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12255,898,876 - 55,930,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2255,899,901 - 55,930,454 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041110,391,185 - 110,418,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MUC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383124,905,442 - 124,934,751 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3124,905,442 - 124,953,819 (-)EnsemblGRCh38hg38GRCh38
GRCh373124,624,289 - 124,653,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363126,106,979 - 126,136,270 (-)NCBINCBI36Build 36hg18NCBI36
Build 343126,106,978 - 126,136,270NCBI
Celera3123,031,093 - 123,060,381 (-)NCBICelera
Cytogenetic Map3q21.2NCBI
HuRef3121,998,336 - 122,027,774 (-)NCBIHuRef
CHM1_13124,587,314 - 124,616,751 (-)NCBICHM1_1
T2T-CHM13v2.03127,630,861 - 127,660,325 (-)NCBIT2T-CHM13v2.0
Muc13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391633,614,407 - 33,640,299 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1633,614,407 - 33,640,304 (+)EnsemblGRCm39 Ensembl
GRCm381633,794,037 - 33,819,929 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1633,794,037 - 33,819,934 (+)EnsemblGRCm38mm10GRCm38
MGSCv371633,794,123 - 33,820,013 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361633,713,784 - 33,739,674 (+)NCBIMGSCv36mm8
Celera1634,278,030 - 34,304,059 (+)NCBICelera
Cytogenetic Map16B3NCBI
cM Map1624.21NCBI
Muc13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81180,462,350 - 80,489,773 (-)NCBIGRCr8
mRatBN7.21166,957,208 - 66,980,264 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,960,595 - 66,984,727 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01170,185,757 - 70,223,012 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1170,185,757 - 70,211,701 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,274,808 - 73,300,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,772,132 - 68,794,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11168,829,764 - 68,852,468 (-)NCBI
Celera1166,407,735 - 66,445,769 (-)NCBICelera
Cytogenetic Map11q22NCBI
Muc13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542723,979,080 - 24,001,627 (-)NCBIChiLan1.0ChiLan1.0
MUC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22122,900,296 - 122,932,140 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13122,905,412 - 122,936,918 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03122,032,535 - 122,060,974 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13128,906,028 - 128,934,426 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3128,907,662 - 128,934,426 (-)Ensemblpanpan1.1panPan2
MUC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13327,926,395 - 27,951,690 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3327,926,442 - 27,958,778 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3327,947,047 - 27,980,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03328,160,269 - 28,185,225 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13327,958,498 - 27,989,359 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03327,999,948 - 28,034,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03328,619,194 - 28,653,174 (-)NCBIUU_Cfam_GSD_1.0
Muc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602126,466,058 - 126,491,885 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936725381,006 - 400,333 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MUC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13135,412,425 - 135,442,691 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113135,416,709 - 135,446,337 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213144,992,658 - 145,020,723 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Muc13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624731943,067 - 955,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 16 14
Below cutoff 35 4 45

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000005943   ⟹   ENSCSAP00000004156
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2255,899,901 - 55,930,454 (+)Ensembl
RefSeq Acc Id: XM_038003431   ⟹   XP_037859359
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666041110,391,185 - 110,418,232 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037859359 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004156.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000004156   ⟸   ENSCSAT00000005943
RefSeq Acc Id: XP_037859359   ⟸   XM_038003431
- UniProtKB: A0A0D9R6B7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000007891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000005943.1 UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  SEA_dom UniProtKB/TrEMBL
KEGG Report csab:103228150 UniProtKB/TrEMBL
NCBI Gene MUC13 ENTREZGENE
PANTHER HEART DEVELOPMENT PROTEIN WITH EGF-LIKE DOMAINS 1 UniProtKB/TrEMBL
  MUCIN-13 UniProtKB/TrEMBL
PROSITE EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SEA UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
Superfamily-SCOP SSF57184 UniProtKB/TrEMBL
UniProt A0A0D9R6B7 ENTREZGENE, UniProtKB/TrEMBL