RAB9A (RAB9A, member RAS oncogene family) - Rat Genome Database

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Gene: RAB9A (RAB9A, member RAS oncogene family) Chlorocebus sabaeus
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Symbol: RAB9A
Name: RAB9A, member RAS oncogene family
RGD ID: 18791257
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation by host of symbiont catalytic activity (inferred); positive regulation of exocytosis (inferred); Rab protein signal transduction (inferred); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Joubert syndrome 1 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); melanosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CASP-like protein Sb04g002820; LOC103231621; ras-related protein Rab-9A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,181,447 - 12,202,778 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,201,049 - 12,201,651 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605613,995,783 - 14,017,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,181,447 - 12,202,778 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX12,201,049 - 12,201,651 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605613,995,783 - 14,017,753 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RAB9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X13,689,128 - 13,710,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX13,689,128 - 13,710,504 (+)EnsemblGRCh38hg38GRCh38
GRCh37X13,707,247 - 13,728,623 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,617,262 - 13,637,685 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X13,466,997 - 13,487,419NCBI
CeleraX17,824,420 - 17,844,845 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX11,465,760 - 11,486,461 (+)NCBIHuRef
CHM1_1X13,738,054 - 13,758,769 (+)NCBICHM1_1
T2T-CHM13v2.0X13,270,511 - 13,291,900 (+)NCBIT2T-CHM13v2.0
Rab9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,240,247 - 165,262,863 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX165,240,249 - 165,262,863 (-)EnsemblGRCm39 Ensembl
GRCm38X166,457,251 - 166,479,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,457,253 - 166,479,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X162,895,191 - 162,917,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X161,801,364 - 161,823,801 (-)NCBIMGSCv36mm8
CeleraX149,637,081 - 149,659,269 (-)NCBICelera
Cytogenetic MapXF5NCBI
cM MapX77.47NCBI
Rab9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X31,610,089 - 31,632,128 (+)NCBIGRCr8
mRatBN7.2X27,955,552 - 28,009,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX27,952,204 - 28,001,622 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX29,012,705 - 29,035,018 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X32,448,112 - 32,470,155 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X28,627,346 - 28,649,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X29,525,256 - 29,547,295 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,525,256 - 29,547,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,918,170 - 29,940,588 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,663,349 - 48,686,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X48,716,817 - 48,740,273 (+)NCBI
CeleraX28,350,514 - 28,373,237 (+)NCBICelera
Cytogenetic MapXq13NCBI
Rab9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,489,159 - 4,496,089 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,489,159 - 4,496,089 (-)NCBIChiLan1.0ChiLan1.0
RAB9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X15,468,636 - 15,489,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X15,472,402 - 15,493,711 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X6,296,483 - 6,317,826 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X13,564,061 - 13,605,532 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,604,454 - 13,605,059 (+)Ensemblpanpan1.1panPan2
RAB9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X10,072,764 - 10,124,620 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX10,102,387 - 10,124,620 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX10,076,908 - 10,099,141 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X10,030,636 - 10,082,741 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX10,060,425 - 10,082,739 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X10,129,115 - 10,151,347 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X10,120,485 - 10,142,705 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X10,146,433 - 10,169,013 (+)NCBIUU_Cfam_GSD_1.0
Rab9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X3,253,617 - 3,275,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364703,253,652 - 3,275,075 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364703,253,631 - 3,275,078 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,293,757 - 10,349,387 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,328,085 - 10,349,399 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,281,830 - 11,303,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Rab9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624882435,879 - 463,069 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624882435,877 - 489,691 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 9 60
Low 11
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000019623   ⟹   ENSCSAP00000019032
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX12,201,049 - 12,201,651 (+)Ensembl
RefSeq Acc Id: XM_007991060   ⟹   XP_007989251
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X12,181,447 - 12,202,778 (+)NCBI
Vero_WHO_p1.0NW_02366605613,995,783 - 14,017,753 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991061   ⟹   XP_007989252
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X12,181,453 - 12,202,778 (+)NCBI
Vero_WHO_p1.0NW_02366605613,995,788 - 14,017,753 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989251 (Get FASTA)   NCBI Sequence Viewer  
  XP_007989252 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000019032
  ENSCSAP00000019032.1
RefSeq Acc Id: XP_007989251   ⟸   XM_007991060
- UniProtKB: A0A0D9SDU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007989252   ⟸   XM_007991061
- UniProtKB: A0A0D9SDU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000019032   ⟸   ENSCSAT00000019623


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019533 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019623.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab9 UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report csab:103231620 UniProtKB/TrEMBL
NCBI Gene RAB9A ENTREZGENE
PANTHER RAB FAMILY UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-9A UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9SDU3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 RAB9A  RAB9A, member RAS oncogene family  LOC103231621  CASP-like protein Sb04g002820  Data merged from RGD:18347021 737654 PROVISIONAL