STAT2 (signal transducer and activator of transcription 2) - Rat Genome Database

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Gene: STAT2 (signal transducer and activator of transcription 2) Chlorocebus sabaeus
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Symbol: STAT2
Name: signal transducer and activator of transcription 2
RGD ID: 18787144
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN regulation of protein phosphorylation (ortholog); PARTICIPATES IN interleukin-27 signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH Arenaviridae infectious disease (ortholog); Bunyaviridae Infections (ortholog); cataract 15 multiple types (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,297,890 - 52,316,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,297,543 - 52,316,105 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,669,493 - 193,688,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
STAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,297,890 - 52,316,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,297,543 - 52,316,105 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,669,493 - 193,688,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,341,597 - 56,360,107 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,341,597 - 56,360,203 (-)EnsemblGRCh38hg38GRCh38
GRCh371256,735,381 - 56,753,891 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,021,648 - 55,040,176 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,021,650 - 55,040,176NCBI
Celera1256,388,733 - 56,407,397 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1253,774,045 - 53,793,077 (-)NCBIHuRef
CHM1_11256,702,765 - 56,721,407 (-)NCBICHM1_1
T2T-CHM13v2.01256,309,243 - 56,327,794 (-)NCBIT2T-CHM13v2.0
Stat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910128,106,367 - 128,128,722 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10128,106,428 - 128,128,718 (+)EnsemblGRCm39 Ensembl
GRCm3810128,270,498 - 128,292,853 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,270,559 - 128,292,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,707,632 - 127,729,905 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,673,525 - 127,695,798 (+)NCBIMGSCv36mm8
Celera10130,656,386 - 130,681,169 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.5NCBI
Stat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,287,025 - 1,302,858 (+)NCBIGRCr8
mRatBN7.27702,565 - 718,349 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7702,495 - 718,967 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,458,867 - 3,474,660 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,334,848 - 5,350,643 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,637,673 - 5,653,273 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,691,064 - 2,707,530 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,691,369 - 2,707,741 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,669,952 - 2,685,673 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,564,385 - 1,580,652 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,564,384 - 1,580,651 (+)NCBI
Celera7578,845 - 593,799 (+)NCBICelera
Cytogenetic Map7q11NCBI
Stat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554583,952,738 - 3,970,668 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554583,953,019 - 3,973,151 (-)NCBIChiLan1.0ChiLan1.0
STAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,972,152 - 37,994,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,968,913 - 37,990,850 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,555,523 - 32,574,137 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,808,586 - 32,827,732 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,808,586 - 32,827,732 (+)Ensemblpanpan1.1panPan2
STAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110641,543 - 660,882 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10642,718 - 658,546 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10704,962 - 724,101 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010650,365 - 669,707 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10649,947 - 669,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110627,617 - 646,943 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.010870,771 - 890,099 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.010994,493 - 1,013,823 (-)NCBIUU_Cfam_GSD_1.0
Stat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494558,106,734 - 58,122,062 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646748,727 - 761,287 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646747,178 - 763,449 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,733,035 - 21,751,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,733,030 - 21,748,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,280,591 - 23,294,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Stat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,648,020 - 11,660,216 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,645,851 - 11,662,812 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008003661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000003192   ⟹   ENSCSAP00000001478
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1152,297,543 - 52,316,105 (-)Ensembl
RefSeq Acc Id: XM_008003661   ⟹   XP_008001852
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11152,297,890 - 52,316,089 (-)NCBI
Vero_WHO_p1.0NW_023666037193,669,493 - 193,688,727 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008001852 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001478
  ENSCSAP00000001478.1
RefSeq Acc Id: XP_008001852   ⟸   XM_008003661
- UniProtKB: A0A0D9QYN9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000001478   ⟸   ENSCSAT00000003192


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005161 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003192.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.532.10 UniProtKB/TrEMBL
  2.60.40.630 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  STAT transcription factor, all-alpha domain UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  STAT UniProtKB/TrEMBL
  STAT2_C UniProtKB/TrEMBL
  STAT2_SH2 UniProtKB/TrEMBL
  STAT_linker UniProtKB/TrEMBL
  STAT_N_sf UniProtKB/TrEMBL
  STAT_TF_alpha UniProtKB/TrEMBL
  STAT_TF_coiled-coil UniProtKB/TrEMBL
  STAT_TF_DNA-bd UniProtKB/TrEMBL
  STAT_TF_DNA-bd_N UniProtKB/TrEMBL
  STAT_TF_prot_interaction UniProtKB/TrEMBL
KEGG Report csab:103238525 UniProtKB/TrEMBL
NCBI Gene STAT2 ENTREZGENE
PANTHER PTHR11801 UniProtKB/TrEMBL
  SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 2 UniProtKB/TrEMBL
Pfam SH2 UniProtKB/TrEMBL
  STAT2_C UniProtKB/TrEMBL
  STAT_alpha UniProtKB/TrEMBL
  STAT_bind UniProtKB/TrEMBL
  STAT_int UniProtKB/TrEMBL
  STAT_linker UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
  STAT_int UniProtKB/TrEMBL
Superfamily-SCOP SSF47655 UniProtKB/TrEMBL
  SSF48092 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A0D9QYN9 ENTREZGENE, UniProtKB/TrEMBL