ZNF3 (zinc finger protein 3) - Rat Genome Database

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Gene: ZNF3 (zinc finger protein 3) Chlorocebus sabaeus
Analyze
Symbol: ZNF3
Name: zinc finger protein 3
RGD ID: 18784233
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); identical protein binding (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,996,615 - 13,008,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,000,838 - 13,007,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,264,523 - 3,276,117 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12812,996,615 - 13,008,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,000,838 - 13,007,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,264,523 - 3,276,117 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,063,837 - 100,082,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7100,064,033 - 100,082,548 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,661,460 - 99,680,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,499,589 - 99,517,307 (-)NCBINCBI36Build 36hg18NCBI36
Build 34799,312,439 - 99,323,981NCBI
Celera794,396,223 - 94,414,030 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,297,044 - 94,315,826 (-)NCBIHuRef
CHM1_1799,591,633 - 99,610,334 (-)NCBICHM1_1
T2T-CHM13v2.07101,303,346 - 101,322,424 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2799,021,590 - 99,040,291 (-)NCBI
Zfp113
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,137,964 - 138,154,043 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,137,964 - 138,154,006 (-)EnsemblGRCm39 Ensembl
GRCm385138,139,702 - 138,155,744 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,139,702 - 138,155,744 (-)EnsemblGRCm38mm10GRCm38
MGSCv375138,580,930 - 138,596,972 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,371,225 - 138,385,476 (-)NCBIMGSCv36mm8
Celera5135,119,704 - 135,135,075 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.97NCBI
Zfp113
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,135,812 - 22,147,427 (-)NCBIGRCr8
mRatBN7.21217,022,104 - 17,033,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1217,022,279 - 17,033,709 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01219,287,541 - 19,298,172 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,288,403 - 19,294,888 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,346,280 - 21,356,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1218,953,278 - 18,963,934 (-)NCBICelera
Cytogenetic Map12q11NCBI
Znf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573795,031 - 799,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955573791,242 - 800,570 (+)NCBIChiLan1.0ChiLan1.0
ZNF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,979,310 - 118,003,591 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,246,371 - 166,268,189 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0792,099,029 - 92,117,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,538,613 - 105,551,025 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,533,692 - 105,551,026 (-)Ensemblpanpan1.1panPan2
Znf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,801,514 - 133,823,626 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543217,189 - 222,335 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543215,991 - 225,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,971,922 - 7,982,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,971,917 - 7,982,693 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,254,603 - 7,266,269 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Znf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,916,614 - 16,930,244 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,917,112 - 16,926,543 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 30 33
Low 6 20 27
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015928   ⟹   ENSCSAP00000013854
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2813,000,838 - 13,007,051 (+)Ensembl
RefSeq Acc Id: XM_008018598   ⟹   XP_008016789
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12812,996,782 - 13,008,199 (+)NCBI
Vero_WHO_p1.0NW_0236660703,264,523 - 3,276,117 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008016789 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013854.1
Reference Protein Sequences
RefSeq Acc Id: XP_008016789   ⟸   XM_008018598
RefSeq Acc Id: ENSCSAP00000013854   ⟸   ENSCSAT00000015928


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017832 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015928.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF3 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 46 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RZ15_CHLSB UniProtKB/TrEMBL