HYCC1 (hyccin PI4KA lipid kinase complex subunit 1) - Rat Genome Database

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Gene: HYCC1 (hyccin PI4KA lipid kinase complex subunit 1) Chlorocebus sabaeus
Analyze
Symbol: HYCC1
Name: hyccin PI4KA lipid kinase complex subunit 1
RGD ID: 18783349
Description: INVOLVED IN myelination (inferred); phosphatidylinositol phosphate biosynthetic process (inferred); protein localization to plasma membrane (inferred); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 5 (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FAM126A; family with sequence similarity 126 member A; hyccin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12135,302,634 - 35,376,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2135,302,687 - 35,372,055 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604269,203,368 - 69,284,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HYCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12135,302,634 - 35,376,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2135,302,687 - 35,372,055 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604269,203,368 - 69,284,091 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HYCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38722,895,843 - 23,014,130 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl722,889,371 - 23,014,130 (-)EnsemblGRCh38hg38GRCh38
GRCh37722,973,830 - 23,053,749 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36722,949,783 - 23,020,273 (-)NCBINCBI36Build 36hg18NCBI36
Celera722,967,200 - 23,040,064 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef722,864,258 - 22,937,122 (-)NCBIHuRef
CHM1_1722,981,792 - 23,054,656 (-)NCBICHM1_1
T2T-CHM13v2.0723,030,828 - 23,150,674 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2723,032,723 - 23,105,592 (-)NCBI
Hycc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,120,274 - 24,235,694 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,120,274 - 24,235,688 (-)EnsemblGRCm39 Ensembl
GRCm38523,915,276 - 24,030,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl523,915,276 - 24,030,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37523,466,749 - 23,536,501 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36523,471,095 - 23,540,734 (-)NCBIMGSCv36mm8
Celera520,907,460 - 20,980,419 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map510.53NCBI
Hycc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8412,024,692 - 12,131,504 (+)NCBIGRCr8
mRatBN7.2411,132,224 - 11,239,120 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl411,132,385 - 11,239,113 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx416,278,487 - 16,339,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0412,105,761 - 12,165,578 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0410,450,467 - 10,510,997 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.047,661,710 - 7,770,179 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl47,661,558 - 7,770,232 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.047,670,158 - 7,731,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.446,500,425 - 6,559,978 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera46,746,100 - 6,805,912 (+)NCBICelera
Cytogenetic Map4q11NCBI
Hycc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541025,227,280 - 25,342,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541025,274,360 - 25,342,112 (-)NCBIChiLan1.0ChiLan1.0
HYCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2627,770,697 - 27,890,301 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1776,098,223 - 76,214,979 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0723,639,552 - 23,710,910 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1723,250,256 - 23,320,970 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl723,251,468 - 23,298,201 (-)Ensemblpanpan1.1panPan2
HYCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11436,594,263 - 36,718,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1436,619,971 - 36,718,895 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1436,135,405 - 36,260,642 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01436,518,565 - 36,643,232 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1436,540,020 - 36,643,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11436,639,794 - 36,765,082 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01436,336,162 - 36,462,554 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01436,673,376 - 36,798,691 (-)NCBIUU_Cfam_GSD_1.0
Hycc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511880,903,053 - 81,001,379 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936478114,930 - 213,109 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936478139,710 - 213,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl991,729,060 - 91,821,619 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1991,729,044 - 91,821,629 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29101,207,486 - 101,296,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Hycc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247397,670,587 - 7,790,405 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247397,664,507 - 7,756,571 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20 13 53
Low 16 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012037   ⟹   ENSCSAP00000010087
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2135,302,687 - 35,372,055 (+)Ensembl
RefSeq Acc Id: XM_007981896   ⟹   XP_007980087
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12135,302,634 - 35,376,364 (+)NCBI
Vero_WHO_p1.0NW_02366604269,203,368 - 69,284,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007981897   ⟹   XP_007980088
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12135,302,772 - 35,371,567 (+)NCBI
Vero_WHO_p1.0NW_02366604269,205,391 - 69,284,091 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038004736   ⟹   XP_037860664
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604269,210,008 - 69,284,034 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007980087 (Get FASTA)   NCBI Sequence Viewer  
  XP_007980088 (Get FASTA)   NCBI Sequence Viewer  
  XP_037860664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010087
  ENSCSAP00000010087.1
Reference Protein Sequences
RefSeq Acc Id: XP_007980087   ⟸   XM_007981896
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RN98 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007980088   ⟸   XM_007981897
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000010087   ⟸   ENSCSAT00000012037
RefSeq Acc Id: XP_037860664   ⟸   XM_038004736
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013945 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012037.1 UniProtKB/TrEMBL
InterPro Hyccin UniProtKB/TrEMBL
KEGG Report csab:103226386 UniProtKB/TrEMBL
NCBI Gene FAM126A ENTREZGENE
PANTHER HYCCIN UniProtKB/TrEMBL
  PTHR31220 UniProtKB/TrEMBL
Pfam Hyccin UniProtKB/TrEMBL
UniProt A0A0D9RN98 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-12 HYCC1  hyccin PI4KA lipid kinase complex subunit 1  FAM126A  family with sequence similarity 126 member A  Symbol and/or name change 5135510 APPROVED