GSG1 (germ cell associated 1) - Rat Genome Database

Name: GSG1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: GSG1 (germ cell associated 1) Chlorocebus sabaeus

Analyze

Symbol:

GSG1

Name:

germ cell associated 1

RGD ID:

18779965

Description:

ENCODES a protein that exhibits RNA polymerase binding (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 6 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

germ cell-specific gene 1 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GSG1 (germ cell associated 1)	NCBI	Ortholog
Mus musculus (house mouse):	Gsg1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Gsg1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gsg1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GSG1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GSG1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gsg1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GSG1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gsg1 (germ cell associated 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	12,990,515 - 13,009,239 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	12,990,594 - 13,009,062 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	22,309,606 - 22,329,877 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 6 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endoplasmic reticulum (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

RNA polymerase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

GSG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	12,990,515 - 13,009,239 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	12,990,594 - 13,009,062 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	22,309,606 - 22,329,877 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

GSG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	13,083,532 - 13,103,667 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	13,083,532 - 13,103,683 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	13,236,466 - 13,256,601 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	13,128,309 - 13,147,886 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	13,127,760 - 13,139,876	NCBI
Celera	12	18,385,909 - 18,405,482 (-)	NCBI		Celera
Cytogenetic Map	12	p13.1	NCBI
HuRef	12	13,006,565 - 13,026,721 (-)	NCBI		HuRef
CHM1_1	12	13,201,867 - 13,222,050 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	12,957,742 - 12,977,872 (-)	NCBI		T2T-CHM13v2.0

Gsg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	135,214,327 - 135,231,334 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	135,214,324 - 135,231,349 (-)	Ensembl		GRCm39 Ensembl
GRCm39 Ensembl	6	135,219,094 - 135,231,150 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	135,237,329 - 135,254,336 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	135,237,326 - 135,254,351 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	135,187,347 - 135,204,354 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	135,203,023 - 135,219,908 (-)	NCBI		MGSCv36	mm8
Celera	6	138,191,336 - 138,208,391 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.07	NCBI

Gsg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	169,822,111 - 169,838,379 (-)	NCBI		GRCr8
mRatBN7.2	4	168,090,773 - 168,107,039 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	168,090,776 - 168,107,039 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	174,385,996 - 174,402,270 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	170,167,236 - 170,183,512 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	168,792,705 - 168,808,969 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	169,020,680 - 169,037,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	169,020,683 - 169,036,950 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	233,291,206 - 233,307,476 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	172,191,997 - 172,208,267 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	172,436,935 - 172,453,203 (-)	NCBI
Celera	4	156,689,909 - 156,706,133 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

Gsg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	9,932,831 - 9,949,607 (-)	NCBI	ChiLan1.0	ChiLan1.0

GSG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	18,539,270 - 18,566,238 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	18,536,030 - 18,556,614 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	13,094,993 - 13,115,653 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	13,500,276 - 13,519,134 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	13,500,276 - 13,519,134 (-)	Ensembl	panpan1.1		panPan2

GSG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	33,286,460 - 33,302,080 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	33,286,571 - 33,426,458 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	13,142,528 - 13,158,117 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	33,592,412 - 33,608,004 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	33,592,524 - 33,608,001 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	33,486,784 - 33,502,365 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	33,436,093 - 33,451,678 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	12,877,759 - 12,893,337 (-)	NCBI		UU_Cfam_GSD_1.0

Gsg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	94,503,717 - 94,517,814 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	4,237,698 - 4,245,736 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	4,237,760 - 4,245,449 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GSG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	59,391,338 - 59,411,230 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	59,391,069 - 59,413,835 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	62,756,186 - 62,760,902 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Gsg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	24,900,087 - 24,917,442 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	24,898,998 - 24,916,096 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium
Low		14	33
Below cutoff	20	4	22

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007967720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007967721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007967722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007967723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037990322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000006583 ⟹ ENSCSAP00000004785

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	11	12,990,594 - 13,009,062 (-)	Ensembl

RefSeq Acc Id:

XM_007967721 ⟹ XP_007965912

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	12,990,515 - 13,009,239 (-)	NCBI
Vero_WHO_p1.0	NW_023666069	22,309,606 - 22,329,877 (+)	NCBI

Sequence:

show sequence

CCCTGGCTGGTGTCCTGCCCTCAGGACATCCTCTCCAATCCACCACACACCACCTTACCCCTCT
GCTGGCAAGAGGGGAGCTGATTCATCGTCACACTAAACACTCATTCTACCCAACTGATTGAGAC
AGAACAGAAGATAAACTGAAACTTCTCTGCCTTCGCACTGCAAGAGTGAATGAGCGATTCCTCT
CAACTGACTCAAAATGTTTGCCTCACCCAGGAGATGGAGCTCGCGAAGGCCTTCTCTGGCCAGC
GGACACTCCTATCTGCCGTCCTCAGCATGCTATCACTCAGCTTCTCCACAATATCCCTGCTCAG
CAACTACTGGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGAGAAAGGTCTGGCAGCC
AAGTGCTTTGACATGCCAGTGTCCCTGGATGGAGATACCACCAACACATCCACCCAGGAGGTGG
TACAATACAACTGGGAGACTGGGGATGACCGGTTCTCCTTCCGGAGCTTCCGGAGTGGCATATG
GCTATCCTGTGAGGAAACTGTGGAAGAACCAGGGGAGAGGTGCCGAAGTTTCATTGAACTCACA
CCACCAACCGAGAGAGAAATCCTATGGTTATCCCTGGGAACGCAGATCACCTACATCGGACTTC
AATTCATCAGCTTCCTCCTGCTACTAACGGACTTGCTACTTACTGCGAACCCTGCCTGTGGGCT
CAAACTGAGCGCCTTTGCTGCTGTTTCCTCTGTGCTGTCAGGTCTCTTGGGGATGGTGGCCCAC
ATGATGTATTCACAAGTCTTCCAGGCGACTGCCAACTTGGGTCCGGAAGACTGGAGACCCCATG
TTTGGAATTATGGCTGGGCCTTCTACATGGCCTGGCTCTCCTTCACCTGCTGCATGGCGTCAGC
TGTCACCACCTTCAACACGTACACCAGGATGGTGCTGGAGTTCAAGTGCAAGCATAGTAAGAGC
TTCAGGGAACCCCCGAACTGCCGACCACATCACCACCGGTGTTTCCCTCGGCAGCTGTCAAGTG
CAGCCCCCACCGTGGGTCCTTTGACCGGCTACCACCAGTATCATAATCAGCCCATCCACTCTGT
CTCTGAGGGAGTCGACTTCTACTCTGAGCTGCGGAACAAGGGATTTCAACGAGAGGCCAGCCAG
GAGCTGAAAGAAGCAGTTAGGTCATCTGTAGAGGAAGAGCACTGTTAGGAGTTAAGCGGGTTTG
GGGAGTAGGCTTGAGCCCCACCTTACACGTCTGCGGATTATCAACATGCGCTTAAGCCAA

hide sequence

RefSeq Acc Id:

XM_007967723 ⟹ XP_007965914

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	12,990,515 - 13,009,167 (-)	NCBI
Vero_WHO_p1.0	NW_023666069	22,309,606 - 22,329,877 (+)	NCBI

Sequence:

show sequence

GAGGGGAGCTGATTCATCGTCACACTAAACACTCATTCTACCCAACTGATTGAGACAGAACAGA
AGATAAACTGAAACTTCTCTGCCTTCGCACTGCAAGAGTGAATGAGCGATTCCTCTCAACTGAC
TCAAAATGTTTGCCTCACCCAGGAGATGGAGCTCGCGAAGGCCTTCTCTGGCCAGCGGACACTC
CTATCTGCCGTCCTCAGCATGCTATCACTCAGCTTCTCCACAATATCCCTGCTCAGCAACTACT
GGTTTGTGGGCACACAGAAGGTGCCCAAGCCCCTGTGCGAGAAAGGTCTGGCAGCCAAGTGCTT
TGACATGCCAGTGTCCCTGGATGGAGATACCACCAACACATCCACCCAGGAGGTGGTACAATAC
AACTGGGAGACTGGGGATGACCGGTTCTCCTTCCGGAGCTTCCGGAGTGGCATATGGCTATCCT
GTGAGGAAACTGTGGAAGAACCAGGGGAGAGGTGCCGAAGTTTCATTGAACTCACACCACCAAC
CGAGAGAGGTGAGAAAGGACTACTGGAATTTGCCACGTTGCAAGGCCCATGTCACCCCACTCTC
CGATTTGGAGGGAAGCGGTTGATGGAGAAGGCTTCCCTCCCCTCCCCTCCCTTGGGGCTTTGTG
GCAAAAATCCTATGGTTATCCCTGGGAACGCAGATCACCTACATCGGACTTCAATTCATCAGCT
TCCTCCTGCTACTAACGGACTTGCTACTTACTGCGAACCCTGCCTGTGGGCTCAAACTGAGCGC
CTTTGCTGCTGTTTCCTCTGTGCTGTCAGGTCTCTTGGGGATGGTGGCCCACATGATGTATTCA
CAAGTCTTCCAGGCGACTGCCAACTTGGGTCCGGAAGACTGGAGACCCCATGTTTGGAATTATG
GCTGGGCCTTCTACATGGCCTGGCTCTCCTTCACCTGCTGCATGGCGTCAGCTGTCACCACCTT
CAACACGTACACCAGGATGGTGCTGGAGTTCAAGTGCAAGCATAGTAAGAGCTTCAGGGAACCC
CCGAACTGCCGACCACATCACCACCGGTGTTTCCCTCGGCAGCTGTCAAGTGCAGCCCCCACCG
TGGGTCCTTTGACCGGCTACCACCAGTATCATAATCAGCCCATCCACTCTGTCTCTGAGGGAGT
CGACTTCTACTCTGAGCTGCGGAACAAGGGATTTCAACGAGAGGCCAGCCAGGAGCTGAAAGAA
GCAGTTAGGTCATCTGTAGAGGAAGAGCACTGTTAGGAGTTAAGCGGGTTTGGGGAGTAGGCTT
GAGCCCCACCTTACACGTCTGCGGATTATCAACATGCGCTTAAGCCAA

hide sequence

RefSeq Acc Id:

XM_037990322 ⟹ XP_037846250

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666069	22,309,606 - 22,329,071 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007965912	(Get FASTA)	NCBI Sequence Viewer
	XP_007965914	(Get FASTA)	NCBI Sequence Viewer
	XP_037846250	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004785
	ENSCSAP00000004785.1

RefSeq Acc Id:	XP_007965912 ⟸ XM_007967721
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R846 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007965914 ⟸ XM_007967723
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCSAP00000004785 ⟸ ENSCSAT00000006583

RefSeq Acc Id:	XP_037846250 ⟸ XM_037990322
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008533	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006583.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.140.150	UniProtKB/TrEMBL
InterPro	GSG-1	UniProtKB/TrEMBL
NCBI Gene	GSG1	ENTREZGENE
PANTHER	EPITHELIAL MEMBRANE PROTEIN-RELATED	UniProtKB/TrEMBL
	GERM CELL-SPECIFIC GENE 1 PROTEIN	UniProtKB/TrEMBL
Pfam	GSG-1	UniProtKB/TrEMBL
UniProt	A0A0D9R846	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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